Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.16■■□□□ 1.62
MMP1P03956 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.16■■□□□ 1.62
MMP1P03956 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.16■■□□□ 1.62
MMP1P03956 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.16■■□□□ 1.62
MMP1P03956 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
MMP1P03956 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.16■■□□□ 1.62
MMP1P03956 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MMP1P03956 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.15■■□□□ 1.62
MMP1P03956 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.15■■□□□ 1.62
MMP1P03956 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MMP1P03956 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MMP1P03956 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
MMP1P03956 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.15■■□□□ 1.62
MMP1P03956 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MMP1P03956 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MMP1P03956 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
MMP1P03956 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MMP1P03956 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.14■■□□□ 1.62
MMP1P03956 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.14■■□□□ 1.62
MMP1P03956 UNC93B3-201ENST00000308076 687 ntBASIC25.14■■□□□ 1.62
MMP1P03956 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
MMP1P03956 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
MMP1P03956 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MMP1P03956 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
MMP1P03956 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.14■■□□□ 1.61
MMP1P03956 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.14■■□□□ 1.61
MMP1P03956 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
MMP1P03956 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.14■■□□□ 1.61
MMP1P03956 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
MMP1P03956 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
MMP1P03956 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
MMP1P03956 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.13■■□□□ 1.61
MMP1P03956 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
MMP1P03956 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MMP1P03956 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MMP1P03956 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.12■■□□□ 1.61
MMP1P03956 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
MMP1P03956 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MMP1P03956 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
MMP1P03956 AC092666.2-201ENST00000613287 246 ntBASIC25.12■■□□□ 1.61
MMP1P03956 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MMP1P03956 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MMP1P03956 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MMP1P03956 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.11■■□□□ 1.61
MMP1P03956 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.11■■□□□ 1.61
MMP1P03956 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.11■■□□□ 1.61
MMP1P03956 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.11■■□□□ 1.61
MMP1P03956 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 AL031432.3-201ENST00000607698 485 ntBASIC25.11■■□□□ 1.61
MMP1P03956 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
MMP1P03956 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
MMP1P03956 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.11■■□□□ 1.61
MMP1P03956 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.11■■□□□ 1.61
MMP1P03956 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.11■■□□□ 1.61
MMP1P03956 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MMP1P03956 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
MMP1P03956 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
MMP1P03956 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MMP1P03956 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.1■■□□□ 1.61
MMP1P03956 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MMP1P03956 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.1■■□□□ 1.61
MMP1P03956 SLC47A1P1-202ENST00000449666 945 ntBASIC25.1■■□□□ 1.61
MMP1P03956 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MMP1P03956 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
MMP1P03956 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
MMP1P03956 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MMP1P03956 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.1■■□□□ 1.61
MMP1P03956 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.1■■□□□ 1.61
MMP1P03956 AC092053.2-201ENST00000640557 1818 ntBASIC25.09■■□□□ 1.61
MMP1P03956 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
MMP1P03956 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.09■■□□□ 1.61
MMP1P03956 AC026271.2-201ENST00000428091 497 ntBASIC25.09■■□□□ 1.61
MMP1P03956 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.09■■□□□ 1.61
MMP1P03956 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.09■■□□□ 1.61
MMP1P03956 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms