Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP4O75161 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP4O75161 AP006294.2-201ENST00000641667 209 ntBASIC31.32■■■□□ 2.6
NPHP4O75161 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP4O75161 DUSP8P4-201ENST00000399538 1761 ntBASIC31.31■■■□□ 2.6
NPHP4O75161 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC31.31■■■□□ 2.6
NPHP4O75161 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC31.31■■■□□ 2.6
NPHP4O75161 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP4O75161 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP4O75161 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC31.31■■■□□ 2.6
NPHP4O75161 ASL-203ENST00000380839 1765 ntTSL 5 BASIC31.31■■■□□ 2.6
NPHP4O75161 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC31.3■■■□□ 2.6
NPHP4O75161 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP4O75161 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC31.29■■■□□ 2.6
NPHP4O75161 PPP1R14BP2-201ENST00000426284 444 ntBASIC31.29■■■□□ 2.6
NPHP4O75161 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC31.29■■■□□ 2.6
NPHP4O75161 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC31.29■■■□□ 2.6
NPHP4O75161 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NPHP4O75161 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC31.28■■■□□ 2.6
NPHP4O75161 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP4O75161 UQCRFS1P1-201ENST00000435169 820 ntBASIC31.28■■■□□ 2.6
NPHP4O75161 AP001160.3-201ENST00000601484 763 ntBASIC31.28■■■□□ 2.6
NPHP4O75161 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
NPHP4O75161 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP4O75161 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP4O75161 MIPEPP3-201ENST00000412105 444 ntBASIC31.27■■■□□ 2.6
NPHP4O75161 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC31.27■■■□□ 2.6
NPHP4O75161 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC31.27■■■□□ 2.6
NPHP4O75161 CASP6-205ENST00000505486 538 ntTSL 4 BASIC31.27■■■□□ 2.6
NPHP4O75161 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
NPHP4O75161 AC010536.3-201ENST00000620306 533 ntBASIC31.27■■■□□ 2.6
NPHP4O75161 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC31.27■■■□□ 2.6
NPHP4O75161 AC004687.1-201ENST00000579003 1625 ntBASIC31.27■■■□□ 2.6
NPHP4O75161 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NPHP4O75161 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC31.26■■■□□ 2.6
NPHP4O75161 ADM-205ENST00000528544 586 ntTSL 2 BASIC31.26■■■□□ 2.6
NPHP4O75161 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
NPHP4O75161 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NPHP4O75161 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
NPHP4O75161 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC31.26■■■□□ 2.59
NPHP4O75161 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP4O75161 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP4O75161 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPHP4O75161 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC31.25■■■□□ 2.59
NPHP4O75161 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC31.25■■■□□ 2.59
NPHP4O75161 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC31.25■■■□□ 2.59
NPHP4O75161 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP4O75161 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC31.24■■■□□ 2.59
NPHP4O75161 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
NPHP4O75161 CYP2T1P-201ENST00000432607 1285 ntBASIC31.24■■■□□ 2.59
NPHP4O75161 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
NPHP4O75161 EI24-213ENST00000618552 1747 ntTSL 5 BASIC31.24■■■□□ 2.59
NPHP4O75161 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
NPHP4O75161 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP4O75161 OXCT2P1-201ENST00000447263 1535 ntBASIC31.24■■■□□ 2.59
NPHP4O75161 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP4O75161 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP4O75161 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC31.24■■■□□ 2.59
NPHP4O75161 RHEB-204ENST00000472642 900 ntTSL 3 BASIC31.24■■■□□ 2.59
NPHP4O75161 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC31.24■■■□□ 2.59
NPHP4O75161 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC31.24■■■□□ 2.59
NPHP4O75161 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.23■■■□□ 2.59
NPHP4O75161 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC31.23■■■□□ 2.59
NPHP4O75161 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP4O75161 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP4O75161 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC31.22■■■□□ 2.59
NPHP4O75161 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC31.22■■■□□ 2.59
NPHP4O75161 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP4O75161 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP4O75161 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP4O75161 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
NPHP4O75161 IRX5-204ENST00000560154 879 ntTSL 5 BASIC31.21■■■□□ 2.59
NPHP4O75161 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP4O75161 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
NPHP4O75161 PHB2-213ENST00000546111 858 ntTSL 2 BASIC31.2■■■□□ 2.59
NPHP4O75161 AC083880.1-201ENST00000608266 535 ntBASIC31.2■■■□□ 2.59
NPHP4O75161 AC092118.2-201ENST00000613495 667 ntBASIC31.2■■■□□ 2.59
NPHP4O75161 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC31.2■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms