Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.092e-13■■□□□ 11.5
CDC40O60508 VEGFA-221ENST00000520265 336 ntTSL 513.15□□□□□ -0.32e-13■■□□□ 11.5
CDC40O60508 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.5□□□□□ -0.412e-13■■□□□ 11.5
CDC40O60508 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC12.24□□□□□ -0.452e-13■■□□□ 11.5
CDC40O60508 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)11.85□□□□□ -0.512e-13■■□□□ 11.5
CDC40O60508 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC11.73□□□□□ -0.532e-13■■□□□ 11.5
CDC40O60508 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.572e-13■■□□□ 11.5
CDC40O60508 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC11.43□□□□□ -0.582e-13■■□□□ 11.5
CDC40O60508 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC11.43□□□□□ -0.582e-13■■□□□ 11.5
CDC40O60508 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.582e-13■■□□□ 11.5
CDC40O60508 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)9.48□□□□□ -0.892e-13■■□□□ 11.5
CDC40O60508 GREB1-203ENST00000381483 2347 ntTSL 1 (best) BASIC9.2□□□□□ -0.947e-7■■□□□ 11.5
CDC40O60508 GREB1-202ENST00000263834 2448 ntTSL 1 (best) BASIC9.03□□□□□ -0.967e-7■■□□□ 11.5
CDC40O60508 ANKRD11-210ENST00000566858 580 ntTSL 414.81□□□□□ -0.041e-6■■□□□ 11.5
CDC40O60508 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.25□□□□□ -0.291e-6■■□□□ 11.5
CDC40O60508 ANKRD11-216ENST00000568924 587 ntTSL 412.61□□□□□ -0.391e-6■■□□□ 11.5
CDC40O60508 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.532e-6■■□□□ 11.5
CDC40O60508 CHST15-202ENST00000435907 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.62e-6■■□□□ 11.5
CDC40O60508 CHST15-205ENST00000628426 3553 ntTSL 2 BASIC10.49□□□□□ -0.732e-6■■□□□ 11.5
CDC40O60508 TMEM126B-209ENST00000531477 820 ntTSL 310.17□□□□□ -0.785e-10■■□□□ 11.5
CDC40O60508 RNASET2-205ENST00000467705 524 ntTSL 59.15□□□□□ -0.945e-10■■□□□ 11.5
CDC40O60508 TMEM126B-206ENST00000530783 675 ntTSL 57.33□□□□□ -1.245e-10■■□□□ 11.5
CDC40O60508 CHST15-203ENST00000462406 826 ntTSL 27.3□□□□□ -1.242e-6■■□□□ 11.5
CDC40O60508 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.265e-10■■□□□ 11.5
CDC40O60508 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC7.09□□□□□ -1.275e-10■■□□□ 11.5
CDC40O60508 RNASET2-211ENST00000509073 433 ntTSL 27□□□□□ -1.295e-10■■□□□ 11.5
CDC40O60508 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.28□□□□□ -1.45e-10■■□□□ 11.5
CDC40O60508 TMEM126B-203ENST00000526822 853 ntTSL 25.26□□□□□ -1.575e-10■■□□□ 11.5
CDC40O60508 TMEM126B-205ENST00000529197 1149 ntTSL 1 (best)2.02□□□□□ -2.095e-10■■□□□ 11.5
CDC40O60508 TMEM126B-208ENST00000531274 376 ntTSL 31.6□□□□□ -2.155e-10■■□□□ 11.5
CDC40O60508 CAPN15-208ENST00000637507 1482 ntTSL 520.18■□□□□ 0.822e-6■■□□□ 11.5
CDC40O60508 SLC22A31-205ENST00000603735 791 ntTSL 315.79■□□□□ 0.121e-6■■□□□ 11.5
CDC40O60508 ARPC2-214ENST00000480062 508 ntTSL 223.75■■□□□ 1.394e-11■■□□□ 11.5
CDC40O60508 ARPC2-204ENST00000420104 482 ntTSL 323.24■■□□□ 1.314e-11■■□□□ 11.5
CDC40O60508 ARPC2-217ENST00000489598 1039 ntTSL 223.24■■□□□ 1.314e-11■■□□□ 11.5
CDC40O60508 ARPC2-203ENST00000414983 713 ntTSL 322.77■■□□□ 1.244e-11■■□□□ 11.5
CDC40O60508 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.234e-11■■□□□ 11.5
CDC40O60508 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.224e-11■■□□□ 11.5
CDC40O60508 ARPC2-218ENST00000491780 577 ntTSL 422.68■■□□□ 1.224e-11■■□□□ 11.5
CDC40O60508 ARPC2-205ENST00000420201 732 ntTSL 322.36■■□□□ 1.174e-11■■□□□ 11.5
CDC40O60508 HNF4A-203ENST00000372920 3340 ntTSL 1 (best)16.37■□□□□ 0.215e-7■■□□□ 11.5
CDC40O60508 NEU4-210ENST00000428592 505 ntTSL 416.29■□□□□ 0.22e-6■■□□□ 11.5
CDC40O60508 ARPC2-215ENST00000484961 722 ntTSL 314.85□□□□□ -0.034e-11■■□□□ 11.5
CDC40O60508 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.01□□□□□ -0.175e-7■■□□□ 11.5
CDC40O60508 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC11.82□□□□□ -0.525e-7■■□□□ 11.5
CDC40O60508 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC11.8□□□□□ -0.525e-7■■□□□ 11.5
CDC40O60508 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC10.52□□□□□ -0.725e-7■■□□□ 11.5
CDC40O60508 HNF4A-201ENST00000316099 6445 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.765e-7■■□□□ 11.5
CDC40O60508 ARPC2-208ENST00000465395 816 ntTSL 27.3□□□□□ -1.244e-11■■□□□ 11.5
CDC40O60508 ARPC2-210ENST00000471355 602 ntTSL 23.12□□□□□ -1.914e-11■■□□□ 11.5
CDC40O60508 ARPC2-211ENST00000472753 503 ntTSL 32.4□□□□□ -2.034e-11■■□□□ 11.5
CDC40O60508 ARPC2-213ENST00000478612 528 ntTSL 31.2□□□□□ -2.224e-11■■□□□ 11.5
CDC40O60508 PLEKHA2-203ENST00000519640 565 ntTSL 518.12■□□□□ 0.493e-6■■□□□ 11.4
CDC40O60508 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.21■□□□□ 0.353e-6■■□□□ 11.4
CDC40O60508 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15□□□□□ -0.013e-6■■□□□ 11.4
CDC40O60508 PLEKHA2-209ENST00000617275 5582 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.583e-6■■□□□ 11.4
CDC40O60508 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC11.05□□□□□ -0.643e-6■■□□□ 11.4
CDC40O60508 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.09■□□□□ 0.011e-6■■□□□ 11.4
CDC40O60508 SETD5-209ENST00000431285 1824 ntTSL 521.93■■□□□ 1.11e-6■■□□□ 11.4
CDC40O60508 SETD5-212ENST00000450326 921 ntTSL 314.41□□□□□ -0.11e-6■■□□□ 11.4
CDC40O60508 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.691e-6■■□□□ 11.4
CDC40O60508 SETD5-211ENST00000443339 3478 ntTSL 29.89□□□□□ -0.831e-6■■□□□ 11.4
CDC40O60508 SETD5-201ENST00000302463 4786 ntTSL 1 (best) BASIC9.08□□□□□ -0.961e-6■■□□□ 11.4
CDC40O60508 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC8.65□□□□□ -1.021e-6■■□□□ 11.4
CDC40O60508 SETD5-210ENST00000442373 900 ntTSL 58.45□□□□□ -1.061e-6■■□□□ 11.4
CDC40O60508 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.161e-6■■□□□ 11.4
CDC40O60508 SETD5-226ENST00000490791 667 ntTSL 36.26□□□□□ -1.411e-6■■□□□ 11.4
CDC40O60508 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.24e-6■■□□□ 11.4
CDC40O60508 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.834e-6■■□□□ 11.4
CDC40O60508 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.68□□□□□ -0.382e-15■■□□□ 11.4
CDC40O60508 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.12e-15■■□□□ 11.4
CDC40O60508 MLXIPL-209ENST00000467221 774 ntTSL 510.06□□□□□ -0.81e-12■■□□□ 11.4
CDC40O60508 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.392e-6■■□□□ 11.4
CDC40O60508 EFNA1-204ENST00000474413 1083 ntTSL 316.48■□□□□ 0.232e-6■■□□□ 11.4
CDC40O60508 EFNA1-203ENST00000469878 1288 ntTSL 312.56□□□□□ -0.42e-6■■□□□ 11.4
CDC40O60508 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC11.53□□□□□ -0.562e-6■■□□□ 11.4
CDC40O60508 RBM5-203ENST00000404526 580 ntTSL 310.54□□□□□ -0.722e-9■□□□□ 11.3
CDC40O60508 RBM5-212ENST00000464087 5616 ntTSL 28.2□□□□□ -1.12e-9■□□□□ 11.3
CDC40O60508 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.162e-9■□□□□ 11.3
CDC40O60508 RBM5-205ENST00000433556 567 ntTSL 47.25□□□□□ -1.252e-9■□□□□ 11.3
CDC40O60508 RBM5-202ENST00000395174 938 ntTSL 37.02□□□□□ -1.292e-9■□□□□ 11.3
CDC40O60508 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.17□□□□□ -1.582e-9■□□□□ 11.3
CDC40O60508 SRRM2-202ENST00000570539 431 ntTSL 29.5□□□□□ -0.893e-20■□□□□ 11.3
CDC40O60508 SH3BP4-204ENST00000416021 593 ntTSL 319.4■□□□□ 0.71e-12■□□□□ 11.3
CDC40O60508 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.93■□□□□ 0.461e-7■□□□□ 11.3
CDC40O60508 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.91■□□□□ 0.461e-7■□□□□ 11.3
CDC40O60508 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.72■□□□□ 0.431e-7■□□□□ 11.3
CDC40O60508 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.171e-7■□□□□ 11.3
CDC40O60508 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.221e-7■□□□□ 11.3
CDC40O60508 CSE1L-201ENST00000262982 3553 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.751e-7■□□□□ 11.3
CDC40O60508 CSE1L-202ENST00000396192 3459 ntTSL 5 BASIC10.13□□□□□ -0.791e-7■□□□□ 11.3
CDC40O60508 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.941e-7■□□□□ 11.3
CDC40O60508 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)16.5■□□□□ 0.234e-7■□□□□ 11.3
CDC40O60508 TAF1D-207ENST00000527169 1127 ntTSL 516.05■□□□□ 0.164e-7■□□□□ 11.3
CDC40O60508 TAF1D-201ENST00000323981 2540 ntTSL 212.51□□□□□ -0.414e-7■□□□□ 11.3
CDC40O60508 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.783e-7■□□□□ 11.3
CDC40O60508 CREB1-204ENST00000421139 713 ntTSL 516.04■□□□□ 0.163e-7■□□□□ 11.3
CDC40O60508 CREB1-206ENST00000432329 7650 ntTSL 1 (best) BASIC10.02□□□□□ -0.813e-7■□□□□ 11.3
CDC40O60508 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.063e-7■□□□□ 11.3
CDC40O60508 CREB1-211ENST00000452474 518 ntTSL 45.9□□□□□ -1.463e-7■□□□□ 11.3
Retrieved 100 of 5,364 protein–RNA pairs in 51.5 ms