RNA–Protein interactions for RNA: ENST00000374736.7

ABCA1-202, Transcript of ATP binding cassette subfamily A member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA1, Length 10,494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1-202ENST00000374736 MYT1Q01538 1121 aa16.18■□□□□ 0.18
ABCA1-202ENST00000374736 PELP1Q8IZL8 1130 aaKnown RBP15.78■□□□□ 0.12
ABCA1-202ENST00000374736 TTBK1Q5TCY1 1321 aaPredicted RBP15.28■□□□□ 0.04
ABCA1-202ENST00000374736 ERICH6Q7L0X2 663 aa14.74□□□□□ -0.05
ABCA1-202ENST00000374736 RANGAP1P46060 587 aaPredicted RBP14.02□□□□□ -0.16
ABCA1-202ENST00000374736 YTHDC1Q96MU7 727 aaKnown RBP14□□□□□ -0.17
ABCA1-202ENST00000374736 SLC24A1O60721 1099 aa13.97□□□□□ -0.17
ABCA1-202ENST00000374736 CCER1Q8TC90 406 aaPredicted RBP13.85□□□□□ -0.19
ABCA1-202ENST00000374736 CENPBP07199 599 aaPredicted RBP13.78□□□□□ -0.2
ABCA1-202ENST00000374736 GLIPR1L2Q4G1C9 344 aa13.53□□□□□ -0.24
ABCA1-202ENST00000374736 ZEB1P37275 1124 aaPredicted RBP13.41□□□□□ -0.26
ABCA1-202ENST00000374736 MYT1LQ9UL68 1186 aa13.36□□□□□ -0.27
ABCA1-202ENST00000374736 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
ABCA1-202ENST00000374736 DAXXQ9UER7 740 aaPredicted RBP13.21□□□□□ -0.3
ABCA1-202ENST00000374736 EIF5BO60841 1220 aaKnown RBP13.15□□□□□ -0.3
ABCA1-202ENST00000374736 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
ABCA1-202ENST00000374736 NEFLP07196 543 aa12.98□□□□□ -0.33
ABCA1-202ENST00000374736 RTL5Q5HYW3 569 aaPredicted RBP12.97□□□□□ -0.33
ABCA1-202ENST00000374736 CLSPNQ9HAW4 1339 aa12.97□□□□□ -0.33
ABCA1-202ENST00000374736 HRCP23327 699 aa12.86□□□□□ -0.35
ABCA1-202ENST00000374736 ZNF326Q5BKZ1 582 aaKnown RBP12.81□□□□□ -0.36
ABCA1-202ENST00000374736 BCL11AQ9H165 835 aa12.79□□□□□ -0.36
ABCA1-202ENST00000374736 POLR3GLQ9BT43 218 aa12.77□□□□□ -0.37
ABCA1-202ENST00000374736 NCLP19338 710 aaKnown RBP12.73□□□□□ -0.37
ABCA1-202ENST00000374736 APLP2Q06481 763 aa12.67□□□□□ -0.38
ABCA1-202ENST00000374736 PRKCSHP14314 528 aaPredicted RBP12.63□□□□□ -0.39
ABCA1-202ENST00000374736 HMGB1P09429 215 aaKnown RBP12.55□□□□□ -0.4
ABCA1-202ENST00000374736 ERICH6BQ5W0A0 696 aa12.55□□□□□ -0.4
ABCA1-202ENST00000374736 ZNF316A6NFI3 1004 aaPredicted RBP12.55□□□□□ -0.4
ABCA1-202ENST00000374736 FAM9AQ8IZU1 332 aaPredicted RBP12.54□□□□□ -0.4
ABCA1-202ENST00000374736 PCGF6Q9BYE7 350 aa12.53□□□□□ -0.4
ABCA1-202ENST00000374736 TNNT2P45379 298 aaPredicted RBP12.52□□□□□ -0.41
ABCA1-202ENST00000374736 ARXQ96QS3 562 aa12.52□□□□□ -0.41
ABCA1-202ENST00000374736 ANP32EQ9BTT0 268 aa12.49□□□□□ -0.41
ABCA1-202ENST00000374736 PTMSP20962 102 aa12.46□□□□□ -0.41
ABCA1-202ENST00000374736 HOMEZQ8IX15 550 aa12.46□□□□□ -0.42
ABCA1-202ENST00000374736 AMER1Q5JTC6 1135 aaPredicted RBP12.42□□□□□ -0.42
ABCA1-202ENST00000374736 TRIM44Q96DX7 344 aaPredicted RBP12.39□□□□□ -0.43
ABCA1-202ENST00000374736 ACIN1Q9UKV3 1341 aaKnown RBP12.39□□□□□ -0.43
ABCA1-202ENST00000374736 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
ABCA1-202ENST00000374736 GTF3C3Q9Y5Q9 886 aa12.38□□□□□ -0.43
ABCA1-202ENST00000374736 PODXL2Q9NZ53 605 aa12.38□□□□□ -0.43
ABCA1-202ENST00000374736 CDK11BP21127 795 aaKnown RBP12.36□□□□□ -0.43
ABCA1-202ENST00000374736 ANP32BQ92688 251 aaKnown RBP12.33□□□□□ -0.44
ABCA1-202ENST00000374736 CDK11AQ9UQ88 783 aaPredicted RBP12.3□□□□□ -0.44
ABCA1-202ENST00000374736 PKNOX2Q96KN3 472 aa12.23□□□□□ -0.45
ABCA1-202ENST00000374736 ANP32AP39687 249 aaKnown RBP12.19□□□□□ -0.46
ABCA1-202ENST00000374736 CNGB1Q14028 1251 aaPredicted RBP12.18□□□□□ -0.46
ABCA1-202ENST00000374736 TRIM26Q12899 539 aaPredicted RBP12.17□□□□□ -0.46
ABCA1-202ENST00000374736 DIEXFQ68CQ4 756 aaKnown RBP12.1□□□□□ -0.47
ABCA1-202ENST00000374736 RSPH6AQ9H0K4 717 aa12.09□□□□□ -0.47
ABCA1-202ENST00000374736 NPM2Q86SE8 214 aaKnown RBP12.09□□□□□ -0.47
ABCA1-202ENST00000374736 SCAF1Q9H7N4 1312 aaKnown RBP12.08□□□□□ -0.48
ABCA1-202ENST00000374736 LAS1LQ9Y4W2 734 aaKnown RBP12.06□□□□□ -0.48
ABCA1-202ENST00000374736 NAP1L5Q96NT1 182 aaPredicted RBP12.06□□□□□ -0.48
ABCA1-202ENST00000374736 C14orf37Q86TY3 774 aa12.06□□□□□ -0.48
ABCA1-202ENST00000374736 BCANQ96GW7 911 aa12.02□□□□□ -0.48
ABCA1-202ENST00000374736 UBE2Q2Q8WVN8 375 aa12.02□□□□□ -0.49
ABCA1-202ENST00000374736 CALRP27797 417 aaKnown RBP12.01□□□□□ -0.49
ABCA1-202ENST00000374736 TAF7LQ5H9L4 462 aa11.98□□□□□ -0.49
ABCA1-202ENST00000374736 ARID4BQ4LE39 1312 aaPredicted RBP11.98□□□□□ -0.49
ABCA1-202ENST00000374736 PDE4CQ08493 712 aa11.96□□□□□ -0.49
ABCA1-202ENST00000374736 TULP1O00294 542 aaPredicted RBP11.95□□□□□ -0.5
ABCA1-202ENST00000374736 HSP90B1P14625 803 aaKnown RBP11.92□□□□□ -0.5
ABCA1-202ENST00000374736 HSP90AA1P07900 732 aaKnown RBP11.9□□□□□ -0.5
ABCA1-202ENST00000374736 FBXO3Q9UK99 471 aa11.88□□□□□ -0.51
ABCA1-202ENST00000374736 APPP05067 770 aa11.86□□□□□ -0.51
ABCA1-202ENST00000374736 PDIA4P13667 645 aaKnown RBP11.85□□□□□ -0.51
ABCA1-202ENST00000374736 PTMAP06454 111 aaKnown RBP11.84□□□□□ -0.51
ABCA1-202ENST00000374736 HSP90AA2PQ14568 343 aaPredicted RBP11.84□□□□□ -0.51
ABCA1-202ENST00000374736 A0A0U1RQG5 324 aaPredicted RBP11.83□□□□□ -0.52
ABCA1-202ENST00000374736 NEFMP07197 916 aa11.83□□□□□ -0.52
ABCA1-202ENST00000374736 RTN4Q9NQC3 1192 aaKnown RBP11.79□□□□□ -0.52
ABCA1-202ENST00000374736 BRD2P25440 801 aaKnown RBP11.79□□□□□ -0.52
ABCA1-202ENST00000374736 ZBTB47Q9UFB7 747 aaPredicted RBP11.79□□□□□ -0.52
ABCA1-202ENST00000374736 ATP1B4Q9UN42 357 aaPredicted RBP11.79□□□□□ -0.52
ABCA1-202ENST00000374736 CANXP27824 592 aaKnown RBP11.78□□□□□ -0.52
ABCA1-202ENST00000374736 PPM1GO15355 546 aaPredicted RBP11.76□□□□□ -0.53
ABCA1-202ENST00000374736 DEKP35659 375 aaKnown RBP11.76□□□□□ -0.53
ABCA1-202ENST00000374736 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
ABCA1-202ENST00000374736 TAF3Q5VWG9 929 aa11.75□□□□□ -0.53
ABCA1-202ENST00000374736 HAP1P54257 671 aaPredicted RBP11.74□□□□□ -0.53
ABCA1-202ENST00000374736 CCDC180Q9P1Z9 1646 aa11.74□□□□□ -0.53
ABCA1-202ENST00000374736 CCDC9Q9Y3X0 531 aaKnown RBP11.73□□□□□ -0.53
ABCA1-202ENST00000374736 PPARGC1BQ86YN6 1023 aaKnown RBP11.71□□□□□ -0.53
ABCA1-202ENST00000374736 TNNT3P45378 269 aaPredicted RBP11.7□□□□□ -0.54
ABCA1-202ENST00000374736 MTERF4Q7Z6M4 381 aaKnown RBP11.7□□□□□ -0.54
ABCA1-202ENST00000374736 SHROOM4Q9ULL8 1493 aa11.7□□□□□ -0.54
ABCA1-202ENST00000374736 DDRGK1Q96HY6 314 aa11.69□□□□□ -0.54
ABCA1-202ENST00000374736 NEUROD1Q13562 356 aa11.69□□□□□ -0.54
ABCA1-202ENST00000374736 USP35Q9P2H5 1018 aa11.68□□□□□ -0.54
ABCA1-202ENST00000374736 NISCHQ9Y2I1 1504 aa11.67□□□□□ -0.54
ABCA1-202ENST00000374736 NBR1Q14596 966 aa11.67□□□□□ -0.54
ABCA1-202ENST00000374736 L1TD1Q5T7N2 865 aaKnown RBP11.67□□□□□ -0.54
ABCA1-202ENST00000374736 CSRNP3Q8WYN3 585 aa11.67□□□□□ -0.54
ABCA1-202ENST00000374736 TPRNQ4KMQ1 711 aa11.67□□□□□ -0.54
ABCA1-202ENST00000374736 DNTTIP2Q5QJE6 756 aaKnown RBP11.67□□□□□ -0.54
ABCA1-202ENST00000374736 HMGB1P1B2RPK0 211 aaPredicted RBP11.65□□□□□ -0.54
ABCA1-202ENST00000374736 MAP7D2Q96T17 732 aa11.65□□□□□ -0.54
ABCA1-202ENST00000374736 PNNQ9H307 717 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms