Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.04■□□□□ 0.96
CACNA1AO00555 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.04■□□□□ 0.96
CACNA1AO00555 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1AO00555 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1AO00555 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1AO00555 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1AO00555 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.03■□□□□ 0.96
CACNA1AO00555 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.03■□□□□ 0.96
CACNA1AO00555 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.03■□□□□ 0.96
CACNA1AO00555 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CACNA1AO00555 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.03■□□□□ 0.96
CACNA1AO00555 AC091874.3-201ENST00000512672 1195 ntBASIC21.03■□□□□ 0.96
CACNA1AO00555 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1AO00555 C2orf69P4-201ENST00000565394 541 ntBASIC21.03■□□□□ 0.96
CACNA1AO00555 OR10C1-204ENST00000622521 1039 ntBASIC21.03■□□□□ 0.96
CACNA1AO00555 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.03■□□□□ 0.96
CACNA1AO00555 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1AO00555 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1AO00555 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CACNA1AO00555 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.02■□□□□ 0.96
CACNA1AO00555 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.02■□□□□ 0.96
CACNA1AO00555 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1AO00555 ARMC10P1-201ENST00000313754 855 ntBASIC21.02■□□□□ 0.95
CACNA1AO00555 AC012618.2-201ENST00000428058 849 ntBASIC21.02■□□□□ 0.95
CACNA1AO00555 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.02■□□□□ 0.95
CACNA1AO00555 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CACNA1AO00555 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CACNA1AO00555 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.01■□□□□ 0.95
CACNA1AO00555 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CACNA1AO00555 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1AO00555 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.01■□□□□ 0.95
CACNA1AO00555 RN7SL850P-201ENST00000579959 291 ntBASIC21.01■□□□□ 0.95
CACNA1AO00555 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1AO00555 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CACNA1AO00555 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1AO00555 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CACNA1AO00555 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.01■□□□□ 0.95
CACNA1AO00555 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.01■□□□□ 0.95
CACNA1AO00555 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CACNA1AO00555 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1AO00555 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21■□□□□ 0.95
CACNA1AO00555 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1AO00555 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CACNA1AO00555 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1AO00555 TMPOP1-202ENST00000424642 1267 ntBASIC21■□□□□ 0.95
CACNA1AO00555 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1AO00555 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21■□□□□ 0.95
CACNA1AO00555 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.99■□□□□ 0.95
CACNA1AO00555 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.99■□□□□ 0.95
CACNA1AO00555 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1AO00555 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1AO00555 BX276092.2-201ENST00000417668 665 ntBASIC20.99■□□□□ 0.95
CACNA1AO00555 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
CACNA1AO00555 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CACNA1AO00555 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CACNA1AO00555 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CACNA1AO00555 AC068338.2-201ENST00000563278 1430 ntBASIC20.99■□□□□ 0.95
CACNA1AO00555 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1AO00555 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1AO00555 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1AO00555 AC007322.4-201ENST00000509611 723 ntBASIC20.99■□□□□ 0.95
CACNA1AO00555 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.99■□□□□ 0.95
CACNA1AO00555 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.99■□□□□ 0.95
CACNA1AO00555 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CACNA1AO00555 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1AO00555 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.98■□□□□ 0.95
CACNA1AO00555 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CACNA1AO00555 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1AO00555 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.98■□□□□ 0.95
CACNA1AO00555 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1AO00555 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CACNA1AO00555 AP001160.3-201ENST00000601484 763 ntBASIC20.98■□□□□ 0.95
CACNA1AO00555 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1AO00555 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1AO00555 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CACNA1AO00555 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.97■□□□□ 0.95
CACNA1AO00555 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CACNA1AO00555 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1AO00555 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1AO00555 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.97■□□□□ 0.95
CACNA1AO00555 AL512625.2-201ENST00000417533 625 ntBASIC20.97■□□□□ 0.95
CACNA1AO00555 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1AO00555 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CACNA1AO00555 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CACNA1AO00555 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.96■□□□□ 0.95
CACNA1AO00555 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 AC097658.1-201ENST00000475555 843 ntBASIC20.96■□□□□ 0.95
CACNA1AO00555 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1AO00555 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1AO00555 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1AO00555 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1AO00555 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms