Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.32■□□□□ 0.68
SKA3Q8IX90 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA3Q8IX90 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA3Q8IX90 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA3Q8IX90 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA3Q8IX90 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 AC024257.2-201ENST00000549699 147 ntBASIC19.31■□□□□ 0.68
SKA3Q8IX90 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 AC136469.2-201ENST00000623944 1028 ntBASIC19.31■□□□□ 0.68
SKA3Q8IX90 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA3Q8IX90 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA3Q8IX90 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.31■□□□□ 0.68
SKA3Q8IX90 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA3Q8IX90 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SKA3Q8IX90 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA3Q8IX90 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 AC110285.6-201ENST00000617652 491 ntBASIC19.29■□□□□ 0.68
SKA3Q8IX90 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA3Q8IX90 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SKA3Q8IX90 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SKA3Q8IX90 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 AC135279.3-201ENST00000610945 1311 ntBASIC19.28■□□□□ 0.68
SKA3Q8IX90 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.28■□□□□ 0.68
SKA3Q8IX90 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 PBX2P1-201ENST00000493219 1291 ntBASIC19.28■□□□□ 0.68
SKA3Q8IX90 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
SKA3Q8IX90 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.28■□□□□ 0.68
SKA3Q8IX90 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.28■□□□□ 0.68
SKA3Q8IX90 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA3Q8IX90 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA3Q8IX90 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA3Q8IX90 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA3Q8IX90 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SKA3Q8IX90 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SKA3Q8IX90 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SKA3Q8IX90 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SKA3Q8IX90 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA3Q8IX90 MIR4767-201ENST00000582827 78 ntBASIC19.27■□□□□ 0.68
SKA3Q8IX90 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA3Q8IX90 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SKA3Q8IX90 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.27■□□□□ 0.67
SKA3Q8IX90 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA3Q8IX90 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA3Q8IX90 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SKA3Q8IX90 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.27■□□□□ 0.67
SKA3Q8IX90 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA3Q8IX90 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SKA3Q8IX90 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA3Q8IX90 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA3Q8IX90 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA3Q8IX90 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA3Q8IX90 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms