Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH1Q08174 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDH1Q08174 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH1Q08174 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
PCDH1Q08174 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
PCDH1Q08174 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PCDH1Q08174 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 AC080038.3-201ENST00000623346 1952 ntBASIC21.12■□□□□ 0.97
PCDH1Q08174 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 OR2I1P-207ENST00000453522 948 ntBASIC21.12■□□□□ 0.97
PCDH1Q08174 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDH1Q08174 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH1Q08174 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.12■□□□□ 0.97
PCDH1Q08174 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH1Q08174 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PCDH1Q08174 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH1Q08174 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH1Q08174 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH1Q08174 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDH1Q08174 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH1Q08174 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH1Q08174 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDH1Q08174 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH1Q08174 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH1Q08174 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH1Q08174 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
PCDH1Q08174 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDH1Q08174 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDH1Q08174 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PCDH1Q08174 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PCDH1Q08174 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH1Q08174 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH1Q08174 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH1Q08174 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PCDH1Q08174 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDH1Q08174 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.1■□□□□ 0.97
PCDH1Q08174 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH1Q08174 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH1Q08174 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 EP400NL-214ENST00000641289 2402 ntBASIC21.09■□□□□ 0.97
PCDH1Q08174 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH1Q08174 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH1Q08174 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDH1Q08174 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.09■□□□□ 0.97
PCDH1Q08174 AC068587.7-201ENST00000641602 218 ntBASIC21.09■□□□□ 0.97
PCDH1Q08174 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDH1Q08174 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH1Q08174 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDH1Q08174 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH1Q08174 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH1Q08174 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH1Q08174 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
PCDH1Q08174 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCDH1Q08174 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDH1Q08174 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDH1Q08174 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH1Q08174 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDH1Q08174 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
PCDH1Q08174 AC011298.3-201ENST00000615796 283 ntBASIC21.08■□□□□ 0.97
PCDH1Q08174 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDH1Q08174 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDH1Q08174 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PCDH1Q08174 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDH1Q08174 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
PCDH1Q08174 AC092053.2-201ENST00000640557 1818 ntBASIC21.08■□□□□ 0.96
PCDH1Q08174 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDH1Q08174 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
PCDH1Q08174 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDH1Q08174 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PCDH1Q08174 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDH1Q08174 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 SERBP1P1-201ENST00000396021 1160 ntBASIC21.07■□□□□ 0.96
PCDH1Q08174 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.07■□□□□ 0.96
PCDH1Q08174 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PCDH1Q08174 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.07■□□□□ 0.96
PCDH1Q08174 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.07■□□□□ 0.96
PCDH1Q08174 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.07■□□□□ 0.96
PCDH1Q08174 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH1Q08174 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms