Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 COL27A1-203ENST00000468565 1946 ntTSL 212.6□□□□□ -0.394e-13■■■■□ 20.2
LSM11P83369 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.393e-8■■■■□ 20.2
LSM11P83369 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.05□□□□□ -0.322e-11■■■■□ 20.2
LSM11P83369 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.482e-11■■■■□ 20.2
LSM11P83369 MSH2-202ENST00000406134 3628 ntTSL 1 (best) BASIC9.38□□□□□ -0.912e-11■■■■□ 20.2
LSM11P83369 MSH2-204ENST00000461394 416 ntTSL 36.37□□□□□ -1.392e-11■■■■□ 20.2
LSM11P83369 NEDD4L-220ENST00000587881 1984 ntTSL 513.49□□□□□ -0.254e-7■■■■□ 20.1
LSM11P83369 NEDD4L-228ENST00000590248 730 ntTSL 211.93□□□□□ -0.54e-7■■■■□ 20.1
LSM11P83369 NEDD4L-234ENST00000592097 582 ntTSL 310.86□□□□□ -0.674e-7■■■■□ 20.1
LSM11P83369 EGFL7-207ENST00000492862 723 ntTSL 515.66■□□□□ 0.13e-8■■■■□ 20.1
LSM11P83369 EGFL7-205ENST00000490469 456 ntTSL 515.06■□□□□ 03e-8■■■■□ 20.1
LSM11P83369 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.59■■□□□ 1.532e-7■■■■□ 20.1
LSM11P83369 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.982e-7■■■■□ 20.1
LSM11P83369 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.474e-6■■■■□ 20
LSM11P83369 TAF4-207ENST00000608887 284 ntTSL 48.34□□□□□ -1.074e-6■■■■□ 20
LSM11P83369 AC073869.8-201ENST00000641806 335 ntBASIC5.82□□□□□ -1.484e-10■■■■□ 20
LSM11P83369 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.653e-7■■■■□ 20
LSM11P83369 SHC2-202ENST00000587423 1691 ntTSL 218.5■□□□□ 0.553e-6■■■■□ 20
LSM11P83369 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.49■□□□□ 0.553e-7■■■■□ 20
LSM11P83369 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.545e-6■■■■□ 20
LSM11P83369 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.07■□□□□ 0.483e-7■■■■□ 20
LSM11P83369 EGFL8-221ENST00000432129 825 ntTSL 517.42■□□□□ 0.383e-6■■■■□ 20
LSM11P83369 INTS11-222ENST00000497304 932 ntTSL 1 (best)17.34■□□□□ 0.376e-8■■■■□ 20
LSM11P83369 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.89■□□□□ 0.293e-7■■■■□ 20
LSM11P83369 GAA-207ENST00000573556 756 ntTSL 216.75■□□□□ 0.273e-6■■■■□ 20
LSM11P83369 PPT2-EGFL8-201ENST00000421600 999 ntAPPRIS ALT2 TSL 516.69■□□□□ 0.263e-6■■■■□ 20
LSM11P83369 AP002990.1-201ENST00000526409 1954 ntTSL 516.14■□□□□ 0.173e-6■■■■□ 20
LSM11P83369 EGFL8-223ENST00000482938 533 ntTSL 315.74■□□□□ 0.113e-6■■■■□ 20
LSM11P83369 PPT2-EGFL8-206ENST00000583227 1540 ntAPPRIS ALT2 TSL 515.68■□□□□ 0.13e-6■■■■□ 20
LSM11P83369 PGGHG-201ENST00000397660 578 ntTSL 515.51■□□□□ 0.071e-11■■■■□ 20
LSM11P83369 INTS11-243ENST00000532772 1618 ntTSL 515.48■□□□□ 0.073e-7■■■■□ 20
LSM11P83369 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.42■□□□□ 0.063e-7■■■■□ 20
LSM11P83369 AP002990.1-203ENST00000534745 546 ntTSL 415.27■□□□□ 0.043e-6■■■■□ 20
LSM11P83369 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.18■□□□□ 0.023e-7■■■■□ 20
LSM11P83369 INTS11-201ENST00000323275 2450 ntTSL 1 (best)15.18■□□□□ 0.023e-7■■■■□ 20
LSM11P83369 PPT2-EGFL8-204ENST00000453656 1327 ntTSL 214.92□□□□□ -0.023e-6■■■■□ 20
LSM11P83369 INTS11-210ENST00000458452 2571 ntTSL 214.84□□□□□ -0.033e-7■■■■□ 20
LSM11P83369 TUT1-204ENST00000469480 2036 ntTSL 314.69□□□□□ -0.063e-6■■■■□ 20
LSM11P83369 ITPA-204ENST00000460550 967 ntTSL 214.62□□□□□ -0.073e-6■■■■□ 20
LSM11P83369 LINC00528-201ENST00000600723 2160 ntBASIC14.52□□□□□ -0.083e-6■■■■□ 20
LSM11P83369 INTS11-216ENST00000478641 3079 ntTSL 214.47□□□□□ -0.091e-7■■■■□ 20
LSM11P83369 ITPA-208ENST00000483354 1028 ntTSL 314.31□□□□□ -0.123e-6■■■■□ 20
LSM11P83369 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.31□□□□□ -0.123e-6■■■■□ 20
LSM11P83369 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.86□□□□□ -0.193e-7■■■■□ 20
LSM11P83369 ITPA-209ENST00000490838 977 ntTSL 213.82□□□□□ -0.23e-6■■■■□ 20
LSM11P83369 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.61□□□□□ -0.233e-7■■■■□ 20
LSM11P83369 INTS11-214ENST00000470030 2369 ntTSL 513.37□□□□□ -0.271e-7■■■■□ 20
LSM11P83369 ITPA-207ENST00000472295 670 ntTSL 213.3□□□□□ -0.283e-6■■■■□ 20
LSM11P83369 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.283e-6■■■■□ 20
LSM11P83369 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.3□□□□□ -0.283e-6■■■■□ 20
LSM11P83369 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.33e-6■■■■□ 20
LSM11P83369 ITPA-206ENST00000461029 378 ntTSL 512.84□□□□□ -0.353e-6■■■■□ 20
LSM11P83369 TUT1-202ENST00000308436 2826 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.463e-6■■■■□ 20
LSM11P83369 AMDHD1-202ENST00000548310 1841 ntTSL 1 (best)11.29□□□□□ -0.65e-6■■■■□ 20
LSM11P83369 INTS11-212ENST00000462432 2863 ntTSL 1 (best)10.76□□□□□ -0.691e-7■■■■□ 20
LSM11P83369 TUT1-205ENST00000476907 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.733e-6■■■■□ 20
LSM11P83369 RANBP1-205ENST00000418705 932 ntTSL 314.48□□□□□ -0.098e-7■■■■□ 20
LSM11P83369 RANBP1-211ENST00000448394 688 ntTSL 212.74□□□□□ -0.378e-7■■■■□ 20
LSM11P83369 TBX2-AS1-201ENST00000586706 476 ntTSL 314.64□□□□□ -0.072e-6■■■■□ 20
LSM11P83369 LAMA5-212ENST00000495695 780 ntTSL 217.52■□□□□ 0.42e-13■■■■□ 20
LSM11P83369 PCED1A-205ENST00000474714 531 ntTSL 312.93□□□□□ -0.342e-8■■■■□ 19.9
LSM11P83369 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.33■□□□□ 0.376e-12■■■■□ 19.9
LSM11P83369 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.72■□□□□ 0.273e-6■■■■□ 19.9
LSM11P83369 YPEL3-206ENST00000565479 865 ntTSL 516.65■□□□□ 0.263e-6■■■■□ 19.9
LSM11P83369 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.4■□□□□ 0.223e-6■■■■□ 19.9
LSM11P83369 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.183e-6■■■■□ 19.9
LSM11P83369 YPEL3-212ENST00000570099 669 ntTSL 311.45□□□□□ -0.583e-6■■■■□ 19.9
LSM11P83369 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC11.43□□□□□ -0.586e-12■■■■□ 19.9
LSM11P83369 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC9.55□□□□□ -0.886e-12■■■■□ 19.9
LSM11P83369 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.22□□□□□ -1.576e-12■■■■□ 19.9
LSM11P83369 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.656e-12■■■■□ 19.9
LSM11P83369 DDX56-207ENST00000448192 691 ntTSL 215.28■□□□□ 0.041e-6■■■■□ 19.9
LSM11P83369 FNBP4-205ENST00000526109 673 ntTSL 310.39□□□□□ -0.751e-6■■■■□ 19.9
LSM11P83369 UNC13D-213ENST00000590762 848 ntTSL 519.75■□□□□ 0.759e-9■■■■□ 19.9
LSM11P83369 UNC13D-203ENST00000585574 658 ntTSL 315.02■□□□□ -09e-9■■■■□ 19.9
LSM11P83369 UNC13D-209ENST00000587495 276 ntTSL 313.41□□□□□ -0.269e-9■■■■□ 19.9
LSM11P83369 UNC13D-205ENST00000586147 589 ntTSL 512.32□□□□□ -0.449e-9■■■■□ 19.9
LSM11P83369 UNC13D-210ENST00000587504 1050 ntTSL 511.84□□□□□ -0.519e-9■■■■□ 19.9
LSM11P83369 UNC13D-217ENST00000592386 930 ntTSL 58.61□□□□□ -1.039e-9■■■■□ 19.9
LSM11P83369 ACAP3-208ENST00000472541 1946 ntTSL 517.64■□□□□ 0.416e-7■■■■□ 19.9
LSM11P83369 NDUFV1-208ENST00000526770 1748 ntTSL 517.05■□□□□ 0.324e-8■■■■□ 19.9
LSM11P83369 NDUFV1-228ENST00000534352 573 ntTSL 216.33■□□□□ 0.24e-8■■■■□ 19.9
LSM11P83369 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.79■□□□□ 0.124e-8■■■■□ 19.9
LSM11P83369 NDUFV1-220ENST00000531250 736 ntTSL 215.57■□□□□ 0.084e-8■■■■□ 19.9
LSM11P83369 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.14e-8■■■■□ 19.9
LSM11P83369 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.114e-8■■■■□ 19.9
LSM11P83369 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.214e-8■■■■□ 19.9
LSM11P83369 ACAP3-211ENST00000479108 485 ntTSL 313.32□□□□□ -0.286e-7■■■■□ 19.9
LSM11P83369 NDUFV1-226ENST00000533919 774 ntTSL 312.75□□□□□ -0.374e-8■■■■□ 19.9
LSM11P83369 NDUFV1-209ENST00000527355 679 ntTSL 212.75□□□□□ -0.374e-8■■■■□ 19.9
LSM11P83369 ACAP3-203ENST00000354980 582 ntTSL 512.38□□□□□ -0.436e-7■■■■□ 19.9
LSM11P83369 ACAP3-205ENST00000438966 265 ntTSL 36.51□□□□□ -1.376e-7■■■■□ 19.9
LSM11P83369 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.361e-8■■■■□ 19.9
LSM11P83369 PLK1-205ENST00000564794 683 ntTSL 514.91□□□□□ -0.021e-6■■■■□ 19.9
LSM11P83369 PLK1-202ENST00000562272 4135 ntTSL 210.93□□□□□ -0.661e-8■■■■□ 19.9
LSM11P83369 TOP3B-205ENST00000434517 736 ntTSL 519.02■□□□□ 0.644e-6■■■■□ 19.9
LSM11P83369 TOP3B-211ENST00000449704 543 ntTSL 313.85□□□□□ -0.194e-6■■■■□ 19.9
LSM11P83369 TOP3B-204ENST00000430142 582 ntTSL 213.17□□□□□ -0.34e-6■■■■□ 19.9
LSM11P83369 TOP3B-207ENST00000437103 571 ntTSL 410.67□□□□□ -0.74e-6■■■■□ 19.9
LSM11P83369 TOP3B-208ENST00000437929 550 ntTSL 49.63□□□□□ -0.874e-6■■■■□ 19.9
Retrieved 100 of 11,495 protein–RNA pairs in 65.8 ms