RNA–Protein interactions for RNA: ENST00000437929.5

TOP3B-208, Transcript of DNA topoisomerase III beta, humanhuman

TSL 4

Gene TOP3B, Length 550 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-208ENST00000437929 AEBP2Q6ZN18 517 aaPredicted RBP21.84■■□□□ 1.09
TOP3B-208ENST00000437929 CHIC1Q5VXU3 224 aa21.64■■□□□ 1.05
TOP3B-208ENST00000437929 PHF23Q9BUL5 403 aaPredicted RBP19.07■□□□□ 0.64
TOP3B-208ENST00000437929 SENP3Q9H4L4 574 aaPredicted RBP18.49■□□□□ 0.55
TOP3B-208ENST00000437929 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
TOP3B-208ENST00000437929 NISCHQ9Y2I1 1504 aa17.52■□□□□ 0.4
TOP3B-208ENST00000437929 FOXD1Q16676 465 aa17.12■□□□□ 0.33
TOP3B-208ENST00000437929 ADRA2BP18089 450 aa16.78■□□□□ 0.28
TOP3B-208ENST00000437929 PPP6R1Q9UPN7 881 aa16.73■□□□□ 0.27
TOP3B-208ENST00000437929 PIAS4Q8N2W9 510 aaPredicted RBP16.28■□□□□ 0.2
TOP3B-208ENST00000437929 ABCC9O60706 1549 aa16.17■□□□□ 0.18
TOP3B-208ENST00000437929 CCDC180Q9P1Z9 1646 aa15.82■□□□□ 0.12
TOP3B-208ENST00000437929 KCNA4P22459 653 aa15.7■□□□□ 0.1
TOP3B-208ENST00000437929 PPP4R3CPQ6ZMV5 832 aa15.68■□□□□ 0.1
TOP3B-208ENST00000437929 MSH5O43196 834 aa15.66■□□□□ 0.1
TOP3B-208ENST00000437929 DNAJC5BQ9UF47 199 aa15.4■□□□□ 0.06
TOP3B-208ENST00000437929 NCBP3Q53F19 620 aaKnown RBP15.37■□□□□ 0.05
TOP3B-208ENST00000437929 SCAF1Q9H7N4 1312 aaKnown RBP15.31■□□□□ 0.04
TOP3B-208ENST00000437929 RB1CC1Q8TDY2 1594 aa15.21■□□□□ 0.03
TOP3B-208ENST00000437929 CNKSR2Q8WXI2 1034 aa15.15■□□□□ 0.02
TOP3B-208ENST00000437929 NPM3O75607 178 aaKnown RBP15.13■□□□□ 0.01
TOP3B-208ENST00000437929 MAPK8IP2Q13387 824 aaPredicted RBP15.12■□□□□ 0.01
TOP3B-208ENST00000437929 EHMT2Q96KQ7 1210 aa15.04■□□□□ -0
TOP3B-208ENST00000437929 SLC4A1APQ9BWU0 796 aaKnown RBP15.03■□□□□ -0
TOP3B-208ENST00000437929 PABPN1Q86U42 306 aaKnown RBP eCLIP15.02■□□□□ -0
TOP3B-208ENST00000437929 NACADO15069 1562 aa15.02□□□□□ -0.01
TOP3B-208ENST00000437929 DCAF8L2P0C7V8 631 aa14.99□□□□□ -0.01
TOP3B-208ENST00000437929 UNC13AQ9UPW8 1703 aa14.91□□□□□ -0.02
TOP3B-208ENST00000437929 BICRAQ9NZM4 1560 aa14.8□□□□□ -0.04
TOP3B-208ENST00000437929 DMRT2Q9Y5R5 561 aa14.79□□□□□ -0.04
TOP3B-208ENST00000437929 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
TOP3B-208ENST00000437929 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
TOP3B-208ENST00000437929 CSRNP3Q8WYN3 585 aa14.61□□□□□ -0.07
TOP3B-208ENST00000437929 HOXD11P31277 338 aaPredicted RBP14.58□□□□□ -0.08
TOP3B-208ENST00000437929 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
TOP3B-208ENST00000437929 CECR2Q9BXF3 1484 aa14.57□□□□□ -0.08
TOP3B-208ENST00000437929 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
TOP3B-208ENST00000437929 SCRIBQ14160 1630 aa14.48□□□□□ -0.09
TOP3B-208ENST00000437929 ZCCHC6Q5VYS8 1495 aaKnown RBP14.47□□□□□ -0.09
TOP3B-208ENST00000437929 EIF4G1Q04637 1599 aaKnown RBP14.46□□□□□ -0.09
TOP3B-208ENST00000437929 ZBTB22O15209 634 aa14.43□□□□□ -0.1
TOP3B-208ENST00000437929 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
TOP3B-208ENST00000437929 FOXD4L1Q9NU39 408 aa14.35□□□□□ -0.11
TOP3B-208ENST00000437929 DCAF8L1A6NGE4 600 aa14.29□□□□□ -0.12
TOP3B-208ENST00000437929 DNAJC5Q9H3Z4 198 aa14.29□□□□□ -0.12
TOP3B-208ENST00000437929 SLC4A2P04920 1241 aa14.19□□□□□ -0.14
TOP3B-208ENST00000437929 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.172e-7■■■□□ 14.6
TOP3B-208ENST00000437929 MYCNP04198 464 aaPredicted RBP13.98□□□□□ -0.17
TOP3B-208ENST00000437929 CUX2O14529 1486 aa13.98□□□□□ -0.17
TOP3B-208ENST00000437929 ERCC6Q03468 1493 aa13.96□□□□□ -0.17
TOP3B-208ENST00000437929 NCAPD3P42695 1498 aa13.87□□□□□ -0.19
TOP3B-208ENST00000437929 ATAD2BQ9ULI0 1458 aa13.82□□□□□ -0.2
TOP3B-208ENST00000437929 NESP48681 1621 aa13.82□□□□□ -0.2
TOP3B-208ENST00000437929 ATXN8OSP0DMR3 200 aa13.76□□□□□ -0.21
TOP3B-208ENST00000437929 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
TOP3B-208ENST00000437929 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
TOP3B-208ENST00000437929 SMARCA2P51531 1590 aa13.75□□□□□ -0.21
TOP3B-208ENST00000437929 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
TOP3B-208ENST00000437929 POTEDQ86YR6 584 aa13.71□□□□□ -0.21
TOP3B-208ENST00000437929 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.22
TOP3B-208ENST00000437929 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
TOP3B-208ENST00000437929 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
TOP3B-208ENST00000437929 BAZ1BQ9UIG0 1483 aaKnown RBP13.68□□□□□ -0.22
TOP3B-208ENST00000437929 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
TOP3B-208ENST00000437929 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
TOP3B-208ENST00000437929 KIF21AQ7Z4S6 1674 aa13.63□□□□□ -0.23
TOP3B-208ENST00000437929 LAMC3Q9Y6N6 1575 aa13.62□□□□□ -0.23
TOP3B-208ENST00000437929 BAZ1AQ9NRL2 1556 aaPredicted RBP13.61□□□□□ -0.23
TOP3B-208ENST00000437929 ATF5Q9Y2D1 282 aaPredicted RBP13.59□□□□□ -0.23
TOP3B-208ENST00000437929 PEG3Q9GZU2 1588 aa13.57□□□□□ -0.24
TOP3B-208ENST00000437929 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
TOP3B-208ENST00000437929 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
TOP3B-208ENST00000437929 APLP2Q06481 763 aa13.49□□□□□ -0.25
TOP3B-208ENST00000437929 MRC2Q9UBG0 1479 aa13.46□□□□□ -0.25
TOP3B-208ENST00000437929 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
TOP3B-208ENST00000437929 RNF39Q9H2S5 420 aa13.44□□□□□ -0.26
TOP3B-208ENST00000437929 WDR62O43379 1518 aa13.44□□□□□ -0.26
TOP3B-208ENST00000437929 WIZO95785 1651 aa13.37□□□□□ -0.27
TOP3B-208ENST00000437929 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
TOP3B-208ENST00000437929 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
TOP3B-208ENST00000437929 FANCD2Q9BXW9 1451 aa13.32□□□□□ -0.28
TOP3B-208ENST00000437929 SPINK5Q9NQ38 1064 aaPredicted RBP13.32□□□□□ -0.28
TOP3B-208ENST00000437929 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
TOP3B-208ENST00000437929 OSCARQ8IYS5 282 aa13.31□□□□□ -0.28
TOP3B-208ENST00000437929 CAPN15O75808 1086 aa13.3□□□□□ -0.28
TOP3B-208ENST00000437929 C1QBPQ07021 282 aaKnown RBP13.29□□□□□ -0.28
TOP3B-208ENST00000437929 FKBP8Q14318 412 aa13.26□□□□□ -0.29
TOP3B-208ENST00000437929 URB2Q14146 1524 aaKnown RBP13.24□□□□□ -0.29
TOP3B-208ENST00000437929 CFTRP13569 1480 aa13.23□□□□□ -0.29
TOP3B-208ENST00000437929 RIMBP3CA6NJZ7 1639 aa13.21□□□□□ -0.3
TOP3B-208ENST00000437929 RIMBP3BA6NNM3 1639 aa13.21□□□□□ -0.3
TOP3B-208ENST00000437929 RIMBP3Q9UFD9 1639 aa13.21□□□□□ -0.3
TOP3B-208ENST00000437929 TOP2AP11388 1531 aaKnown RBP13.14□□□□□ -0.31
TOP3B-208ENST00000437929 RSF1Q96T23 1441 aaPredicted RBP13.13□□□□□ -0.31
TOP3B-208ENST00000437929 ZNF608Q9ULD9 1512 aaPredicted RBP13.13□□□□□ -0.31
TOP3B-208ENST00000437929 POLA2Q14181 598 aa13.12□□□□□ -0.31
TOP3B-208ENST00000437929 ARHGEF11O15085 1522 aa13.12□□□□□ -0.31
TOP3B-208ENST00000437929 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
TOP3B-208ENST00000437929 IFT140Q96RY7 1462 aa13.09□□□□□ -0.31
TOP3B-208ENST00000437929 ABCB7O75027 752 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms