RNA–Protein interactions for RNA: ENST00000461394.5

MSH2-204, Transcript of mutS homolog 2, humanhuman

TSL 3

Gene MSH2, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-204ENST00000461394 NISCHQ9Y2I1 1504 aa15.06■□□□□ 0
MSH2-204ENST00000461394 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
MSH2-204ENST00000461394 AEBP2Q6ZN18 517 aaPredicted RBP14.05□□□□□ -0.16
MSH2-204ENST00000461394 CCDC180Q9P1Z9 1646 aa13.16□□□□□ -0.3
MSH2-204ENST00000461394 PHF23Q9BUL5 403 aaPredicted RBP12.8□□□□□ -0.36
MSH2-204ENST00000461394 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.38
MSH2-204ENST00000461394 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
MSH2-204ENST00000461394 SHROOM4Q9ULL8 1493 aa12.46□□□□□ -0.42
MSH2-204ENST00000461394 ABCC9O60706 1549 aa12.4□□□□□ -0.42
MSH2-204ENST00000461394 DCAF1Q9Y4B6 1507 aa12.4□□□□□ -0.42
MSH2-204ENST00000461394 MYO15BQ96JP2 1530 aa12.21□□□□□ -0.46
MSH2-204ENST00000461394 NACADO15069 1562 aa12.2□□□□□ -0.46
MSH2-204ENST00000461394 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
MSH2-204ENST00000461394 SCRIBQ14160 1630 aa12.16□□□□□ -0.46
MSH2-204ENST00000461394 RB1CC1Q8TDY2 1594 aa12.13□□□□□ -0.47
MSH2-204ENST00000461394 SUPT5HO00267 1087 aaKnown RBP12.02□□□□□ -0.49
MSH2-204ENST00000461394 UNC13AQ9UPW8 1703 aa11.91□□□□□ -0.5
MSH2-204ENST00000461394 SENP3Q9H4L4 574 aaPredicted RBP11.89□□□□□ -0.51
MSH2-204ENST00000461394 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
MSH2-204ENST00000461394 CECR2Q9BXF3 1484 aa11.7□□□□□ -0.54
MSH2-204ENST00000461394 BICRAQ9NZM4 1560 aa11.69□□□□□ -0.54
MSH2-204ENST00000461394 RSF1Q96T23 1441 aaPredicted RBP11.69□□□□□ -0.54
MSH2-204ENST00000461394 BAZ1AQ9NRL2 1556 aaPredicted RBP11.66□□□□□ -0.54
MSH2-204ENST00000461394 MROH2BQ7Z745 1585 aa11.65□□□□□ -0.54
MSH2-204ENST00000461394 WIZO95785 1651 aa11.62□□□□□ -0.55
MSH2-204ENST00000461394 SMARCA4P51532 1647 aa11.6□□□□□ -0.55
MSH2-204ENST00000461394 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
MSH2-204ENST00000461394 TOP2AP11388 1531 aaKnown RBP11.46□□□□□ -0.57
MSH2-204ENST00000461394 KCNA4P22459 653 aa11.39□□□□□ -0.59
MSH2-204ENST00000461394 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
MSH2-204ENST00000461394 PEG3Q9GZU2 1588 aa11.37□□□□□ -0.59
MSH2-204ENST00000461394 EIF4G1Q04637 1599 aaKnown RBP11.37□□□□□ -0.59
MSH2-204ENST00000461394 BAZ1BQ9UIG0 1483 aaKnown RBP11.36□□□□□ -0.59
MSH2-204ENST00000461394 ATAD2BQ9ULI0 1458 aa11.35□□□□□ -0.59
MSH2-204ENST00000461394 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
MSH2-204ENST00000461394 ADRA2BP18089 450 aa11.28□□□□□ -0.6
MSH2-204ENST00000461394 TRIM41Q8WV44 630 aa11.27□□□□□ -0.61
MSH2-204ENST00000461394 HMGXB3Q12766 1538 aa11.25□□□□□ -0.61
MSH2-204ENST00000461394 CC2D2AQ9P2K1 1620 aa11.21□□□□□ -0.61
MSH2-204ENST00000461394 NCAPD3P42695 1498 aa11.2□□□□□ -0.62
MSH2-204ENST00000461394 ABCC8Q09428 1581 aa11.17□□□□□ -0.62
MSH2-204ENST00000461394 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
MSH2-204ENST00000461394 PRDM2Q13029 1718 aa11.08□□□□□ -0.64
MSH2-204ENST00000461394 CSRNP3Q8WYN3 585 aa11.07□□□□□ -0.64
MSH2-204ENST00000461394 LOC105371045A0A1W2PR82 267 aa11.05□□□□□ -0.64
MSH2-204ENST00000461394 WRNQ14191 1432 aaPredicted RBP eCLIP11.05□□□□□ -0.64
MSH2-204ENST00000461394 PPP6R1Q9UPN7 881 aa11.04□□□□□ -0.64
MSH2-204ENST00000461394 SLC4A1APQ9BWU0 796 aaKnown RBP11.03□□□□□ -0.64
MSH2-204ENST00000461394 SYNJ1O43426 1573 aa11.02□□□□□ -0.65
MSH2-204ENST00000461394 CFTRP13569 1480 aa10.99□□□□□ -0.65
MSH2-204ENST00000461394 BIVM-ERCC5R4GMW8 1640 aa10.96□□□□□ -0.65
MSH2-204ENST00000461394 TOP2BQ02880 1626 aa10.95□□□□□ -0.66
MSH2-204ENST00000461394 CADPSQ9ULU8 1353 aa10.95□□□□□ -0.66
MSH2-204ENST00000461394 SOGA1O94964 1423 aa10.92□□□□□ -0.66
MSH2-204ENST00000461394 EEA1Q15075 1411 aa10.92□□□□□ -0.66
MSH2-204ENST00000461394 CUX1P39880 1505 aa10.89□□□□□ -0.67
MSH2-204ENST00000461394 LAMC3Q9Y6N6 1575 aa10.89□□□□□ -0.67
MSH2-204ENST00000461394 NESP48681 1621 aa10.88□□□□□ -0.67
MSH2-204ENST00000461394 FOXD1Q16676 465 aa10.88□□□□□ -0.67
MSH2-204ENST00000461394 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
MSH2-204ENST00000461394 FANCD2Q9BXW9 1451 aa10.87□□□□□ -0.67
MSH2-204ENST00000461394 CEP164Q9UPV0 1460 aa10.83□□□□□ -0.68
MSH2-204ENST00000461394 UBTFP17480 764 aaKnown RBP10.82□□□□□ -0.68
MSH2-204ENST00000461394 KIF21AQ7Z4S6 1674 aa10.82□□□□□ -0.68
MSH2-204ENST00000461394 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
MSH2-204ENST00000461394 DNMBPQ6XZF7 1577 aa10.81□□□□□ -0.68
MSH2-204ENST00000461394 KIF21BO75037 1637 aa10.8□□□□□ -0.68
MSH2-204ENST00000461394 NCBP3Q53F19 620 aaKnown RBP10.8□□□□□ -0.68
MSH2-204ENST00000461394 DNAJC5BQ9UF47 199 aa10.8□□□□□ -0.68
MSH2-204ENST00000461394 PDS5BQ9NTI5 1447 aa10.79□□□□□ -0.68
MSH2-204ENST00000461394 PPP4R3CPQ6ZMV5 832 aa10.79□□□□□ -0.68
MSH2-204ENST00000461394 FGD5Q6ZNL6 1462 aa10.79□□□□□ -0.68
MSH2-204ENST00000461394 KIF27Q86VH2 1401 aa10.77□□□□□ -0.68
MSH2-204ENST00000461394 TOPBP1Q92547 1522 aa10.76□□□□□ -0.69
MSH2-204ENST00000461394 CUX2O14529 1486 aa10.75□□□□□ -0.69
MSH2-204ENST00000461394 TNIKQ9UKE5 1360 aa10.75□□□□□ -0.69
MSH2-204ENST00000461394 CEP162Q5TB80 1403 aa10.73□□□□□ -0.69
MSH2-204ENST00000461394 SLC24A1O60721 1099 aa10.72□□□□□ -0.69
MSH2-204ENST00000461394 URB2Q14146 1524 aaKnown RBP10.72□□□□□ -0.69
MSH2-204ENST00000461394 POLA1P09884 1462 aaPredicted RBP10.7□□□□□ -0.7
MSH2-204ENST00000461394 RAPGEF2Q9Y4G8 1499 aa10.7□□□□□ -0.7
MSH2-204ENST00000461394 ERICH3Q5RHP9 1530 aa10.69□□□□□ -0.7
MSH2-204ENST00000461394 RAD54L2Q9Y4B4 1467 aa10.69□□□□□ -0.7
MSH2-204ENST00000461394 RANGAP1P46060 587 aaPredicted RBP10.68□□□□□ -0.7
MSH2-204ENST00000461394 ERCC6Q03468 1493 aa10.68□□□□□ -0.7
MSH2-204ENST00000461394 PCGF6Q9BYE7 350 aa10.67□□□□□ -0.7
MSH2-204ENST00000461394 MRC2Q9UBG0 1479 aa10.67□□□□□ -0.7
MSH2-204ENST00000461394 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
MSH2-204ENST00000461394 ABCA10Q8WWZ4 1543 aa10.65□□□□□ -0.7
MSH2-204ENST00000461394 PRXQ9BXM0 1461 aa10.65□□□□□ -0.7
MSH2-204ENST00000461394 CLIP1P30622 1438 aa10.64□□□□□ -0.71
MSH2-204ENST00000461394 CUL7Q14999 1698 aa10.63□□□□□ -0.71
MSH2-204ENST00000461394 TRIM26Q12899 539 aaPredicted RBP10.62□□□□□ -0.71
MSH2-204ENST00000461394 PPARGC1BQ86YN6 1023 aaKnown RBP10.61□□□□□ -0.71
MSH2-204ENST00000461394 IGF1RP08069 1367 aa10.61□□□□□ -0.71
MSH2-204ENST00000461394 CARMIL1Q5VZK9 1371 aa10.61□□□□□ -0.71
MSH2-204ENST00000461394 PBRM1Q86U86 1689 aa10.6□□□□□ -0.71
MSH2-204ENST00000461394 ABCA5Q8WWZ7 1642 aa10.59□□□□□ -0.71
MSH2-204ENST00000461394 TARBP1Q13395 1621 aaKnown RBP10.58□□□□□ -0.72
MSH2-204ENST00000461394 WDR62O43379 1518 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms