Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MIR3648-1-201ENST00000615959 180 ntBASIC17.62■□□□□ 0.41
HMGB3O15347 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HMGB3O15347 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB3O15347 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB3O15347 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGB3O15347 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
HMGB3O15347 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGB3O15347 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGB3O15347 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGB3O15347 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGB3O15347 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 ESRRAP2-201ENST00000418437 1549 ntBASIC17.61■□□□□ 0.41
HMGB3O15347 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGB3O15347 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGB3O15347 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB3O15347 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 KRT18P10-201ENST00000388836 1287 ntBASIC17.6■□□□□ 0.41
HMGB3O15347 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB3O15347 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 AC090877.2-201ENST00000558441 1738 ntBASIC17.6■□□□□ 0.41
HMGB3O15347 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 C11orf96-202ENST00000528572 1834 ntBASIC17.6■□□□□ 0.41
HMGB3O15347 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.6■□□□□ 0.41
HMGB3O15347 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB3O15347 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
HMGB3O15347 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB3O15347 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGB3O15347 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
HMGB3O15347 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB3O15347 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
HMGB3O15347 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB3O15347 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB3O15347 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB3O15347 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB3O15347 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGB3O15347 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HMGB3O15347 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 AC016575.1-201ENST00000607026 382 ntBASIC17.58■□□□□ 0.4
HMGB3O15347 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGB3O15347 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB3O15347 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB3O15347 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB3O15347 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 AC092053.2-201ENST00000640557 1818 ntBASIC17.57■□□□□ 0.4
HMGB3O15347 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.57■□□□□ 0.4
HMGB3O15347 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB3O15347 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB3O15347 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB3O15347 AC139530.1-201ENST00000575312 1977 ntBASIC17.57■□□□□ 0.4
HMGB3O15347 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms