Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SNORA78-201ENST00000459373 127 ntBASIC21.12■□□□□ 0.97
CACNA1AO00555 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.12■□□□□ 0.97
CACNA1AO00555 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.12■□□□□ 0.97
CACNA1AO00555 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.12■□□□□ 0.97
CACNA1AO00555 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.12■□□□□ 0.97
CACNA1AO00555 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.12■□□□□ 0.97
CACNA1AO00555 Z99916.2-201ENST00000604037 246 ntBASIC21.12■□□□□ 0.97
CACNA1AO00555 AC010536.3-201ENST00000620306 533 ntBASIC21.12■□□□□ 0.97
CACNA1AO00555 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.12■□□□□ 0.97
CACNA1AO00555 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CACNA1AO00555 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CACNA1AO00555 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.11■□□□□ 0.97
CACNA1AO00555 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CACNA1AO00555 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CACNA1AO00555 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CACNA1AO00555 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.11■□□□□ 0.97
CACNA1AO00555 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CACNA1AO00555 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.1■□□□□ 0.97
CACNA1AO00555 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1AO00555 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.1■□□□□ 0.97
CACNA1AO00555 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1AO00555 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1AO00555 AC096887.2-201ENST00000623443 1957 ntBASIC21.1■□□□□ 0.97
CACNA1AO00555 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1AO00555 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.1■□□□□ 0.97
CACNA1AO00555 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.1■□□□□ 0.97
CACNA1AO00555 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CACNA1AO00555 AC013268.1-206ENST00000638368 961 ntBASIC21.1■□□□□ 0.97
CACNA1AO00555 AC112229.1-201ENST00000639295 961 ntBASIC21.1■□□□□ 0.97
CACNA1AO00555 TPM4P1-201ENST00000436100 807 ntBASIC21.09■□□□□ 0.97
CACNA1AO00555 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CACNA1AO00555 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CACNA1AO00555 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CACNA1AO00555 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.09■□□□□ 0.97
CACNA1AO00555 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1AO00555 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CACNA1AO00555 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1AO00555 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CACNA1AO00555 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.08■□□□□ 0.96
CACNA1AO00555 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.08■□□□□ 0.96
CACNA1AO00555 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CACNA1AO00555 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CACNA1AO00555 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.07■□□□□ 0.96
CACNA1AO00555 AP003097.1-201ENST00000530657 1135 ntBASIC21.07■□□□□ 0.96
CACNA1AO00555 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.07■□□□□ 0.96
CACNA1AO00555 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CACNA1AO00555 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CACNA1AO00555 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CACNA1AO00555 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CACNA1AO00555 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.06■□□□□ 0.96
CACNA1AO00555 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.06■□□□□ 0.96
CACNA1AO00555 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.06■□□□□ 0.96
CACNA1AO00555 KRT18P35-201ENST00000510488 1269 ntBASIC21.06■□□□□ 0.96
CACNA1AO00555 AC012306.2-201ENST00000609350 630 ntBASIC21.06■□□□□ 0.96
CACNA1AO00555 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.06■□□□□ 0.96
CACNA1AO00555 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CACNA1AO00555 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.06■□□□□ 0.96
CACNA1AO00555 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CACNA1AO00555 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CACNA1AO00555 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CACNA1AO00555 AL359736.2-201ENST00000621992 437 ntBASIC21.05■□□□□ 0.96
CACNA1AO00555 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.05■□□□□ 0.96
CACNA1AO00555 CYP2T1P-201ENST00000432607 1285 ntBASIC21.05■□□□□ 0.96
CACNA1AO00555 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.04■□□□□ 0.96
CACNA1AO00555 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CACNA1AO00555 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CACNA1AO00555 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms