Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH3P20585 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH3P20585 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH3P20585 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH3P20585 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH3P20585 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH3P20585 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH3P20585 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.84■■□□□ 1.09
MSH3P20585 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH3P20585 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH3P20585 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.84■■□□□ 1.09
MSH3P20585 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
MSH3P20585 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH3P20585 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.84■■□□□ 1.09
MSH3P20585 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
MSH3P20585 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
MSH3P20585 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH3P20585 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH3P20585 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH3P20585 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH3P20585 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH3P20585 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.83■■□□□ 1.09
MSH3P20585 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH3P20585 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
MSH3P20585 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.83■■□□□ 1.08
MSH3P20585 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
MSH3P20585 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH3P20585 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
MSH3P20585 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH3P20585 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH3P20585 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
MSH3P20585 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
MSH3P20585 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH3P20585 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH3P20585 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH3P20585 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH3P20585 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSH3P20585 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
MSH3P20585 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH3P20585 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 EDA-201ENST00000338901 1233 ntBASIC21.8■■□□□ 1.08
MSH3P20585 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSH3P20585 OR2I1P-207ENST00000453522 948 ntBASIC21.8■■□□□ 1.08
MSH3P20585 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH3P20585 AC133561.4-201ENST00000566112 224 ntBASIC21.8■■□□□ 1.08
MSH3P20585 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.8■■□□□ 1.08
MSH3P20585 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH3P20585 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH3P20585 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH3P20585 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH3P20585 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
MSH3P20585 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.79■■□□□ 1.08
MSH3P20585 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH3P20585 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH3P20585 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH3P20585 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
MSH3P20585 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH3P20585 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH3P20585 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH3P20585 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH3P20585 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.78■■□□□ 1.08
MSH3P20585 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
MSH3P20585 AL355001.2-201ENST00000620617 1191 ntBASIC21.78■■□□□ 1.08
MSH3P20585 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH3P20585 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH3P20585 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH3P20585 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
MSH3P20585 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH3P20585 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH3P20585 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH3P20585 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH3P20585 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH3P20585 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH3P20585 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH3P20585 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH3P20585 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms