Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.84■□□□□ 0.93
PROM1O43490 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PROM1O43490 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PROM1O43490 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.84■□□□□ 0.93
PROM1O43490 AL138724.1-201ENST00000606771 1088 ntBASIC20.84■□□□□ 0.93
PROM1O43490 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.84■□□□□ 0.93
PROM1O43490 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PROM1O43490 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PROM1O43490 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PROM1O43490 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PROM1O43490 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PROM1O43490 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
PROM1O43490 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.83■□□□□ 0.93
PROM1O43490 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.83■□□□□ 0.93
PROM1O43490 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PROM1O43490 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.83■□□□□ 0.93
PROM1O43490 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.83■□□□□ 0.93
PROM1O43490 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.83■□□□□ 0.93
PROM1O43490 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
PROM1O43490 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.82■□□□□ 0.92
PROM1O43490 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.82■□□□□ 0.92
PROM1O43490 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.82■□□□□ 0.92
PROM1O43490 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PROM1O43490 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.82■□□□□ 0.92
PROM1O43490 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PROM1O43490 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PROM1O43490 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.82■□□□□ 0.92
PROM1O43490 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PROM1O43490 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PROM1O43490 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
PROM1O43490 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.81■□□□□ 0.92
PROM1O43490 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PROM1O43490 ESRRAP2-201ENST00000418437 1549 ntBASIC20.81■□□□□ 0.92
PROM1O43490 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PROM1O43490 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PROM1O43490 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PROM1O43490 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.81■□□□□ 0.92
PROM1O43490 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PROM1O43490 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.8■□□□□ 0.92
PROM1O43490 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.8■□□□□ 0.92
PROM1O43490 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PROM1O43490 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PROM1O43490 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.79■□□□□ 0.92
PROM1O43490 UNC93B3-201ENST00000308076 687 ntBASIC20.79■□□□□ 0.92
PROM1O43490 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PROM1O43490 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.79■□□□□ 0.92
PROM1O43490 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PROM1O43490 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PROM1O43490 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.79■□□□□ 0.92
PROM1O43490 AC011298.3-201ENST00000615796 283 ntBASIC20.79■□□□□ 0.92
PROM1O43490 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PROM1O43490 AC087742.1-201ENST00000575880 1738 ntBASIC20.78■□□□□ 0.92
PROM1O43490 AC233723.2-201ENST00000623798 2106 ntBASIC20.78■□□□□ 0.92
PROM1O43490 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.78■□□□□ 0.92
PROM1O43490 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.78■□□□□ 0.92
PROM1O43490 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.78■□□□□ 0.92
PROM1O43490 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.78■□□□□ 0.92
PROM1O43490 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PROM1O43490 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.78■□□□□ 0.92
PROM1O43490 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 LINC01960-201ENST00000563759 1884 ntBASIC20.77■□□□□ 0.92
PROM1O43490 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PROM1O43490 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.77■□□□□ 0.92
PROM1O43490 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.77■□□□□ 0.92
PROM1O43490 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PROM1O43490 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.77■□□□□ 0.92
PROM1O43490 AC136469.2-201ENST00000623944 1028 ntBASIC20.77■□□□□ 0.92
PROM1O43490 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PROM1O43490 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
PROM1O43490 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PROM1O43490 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PROM1O43490 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms