Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PLEKHA5-203ENST00000429027 4762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 AC020763.3-201ENST00000625095 2904 ntBASIC12.5□□□□□ -0.41
CLK1P49759 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
CLK1P49759 COL8A1-201ENST00000261037 5705 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 USP30-201ENST00000257548 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 PYY2-201ENST00000315776 282 ntBASIC12.5□□□□□ -0.41
CLK1P49759 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 AC106827.1-201ENST00000366454 431 ntBASIC12.5□□□□□ -0.41
CLK1P49759 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
CLK1P49759 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 AL627422.1-201ENST00000434104 580 ntBASIC12.5□□□□□ -0.41
CLK1P49759 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.5□□□□□ -0.41
CLK1P49759 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.5□□□□□ -0.41
CLK1P49759 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.5□□□□□ -0.41
CLK1P49759 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC12.5□□□□□ -0.41
CLK1P49759 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.5□□□□□ -0.41
CLK1P49759 MIR2392-201ENST00000584881 84 ntBASIC12.5□□□□□ -0.41
CLK1P49759 AC005632.3-201ENST00000605544 308 ntBASIC12.5□□□□□ -0.41
CLK1P49759 AL359091.4-201ENST00000610052 409 ntBASIC12.5□□□□□ -0.41
CLK1P49759 AC009145.4-201ENST00000625119 1294 ntBASIC12.5□□□□□ -0.41
CLK1P49759 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC12.5□□□□□ -0.41
CLK1P49759 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.5□□□□□ -0.41
CLK1P49759 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 DHODH-205ENST00000572887 4824 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 DDC-204ENST00000426377 1700 ntTSL 3 BASIC12.5□□□□□ -0.41
CLK1P49759 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 AC245140.2-201ENST00000624054 1939 ntBASIC12.5□□□□□ -0.41
CLK1P49759 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 C1orf216-201ENST00000270815 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 NLRP2-214ENST00000543010 3576 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CLK1P49759 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 LINC02204-201ENST00000630447 3206 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 SLC26A2-201ENST00000286298 8080 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 LINC02228-202ENST00000641261 2489 ntBASIC12.49□□□□□ -0.41
CLK1P49759 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 CICP9-201ENST00000444451 1913 ntBASIC12.49□□□□□ -0.41
CLK1P49759 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 GOLGA8UP-201ENST00000527159 1755 ntBASIC12.49□□□□□ -0.41
CLK1P49759 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 ODCP-201ENST00000459650 1639 ntBASIC12.49□□□□□ -0.41
CLK1P49759 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 RNF115-202ENST00000582693 9117 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 HLA-DMA-203ENST00000395305 777 ntBASIC12.49□□□□□ -0.41
CLK1P49759 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 AC022494.1-201ENST00000466044 728 ntBASIC12.49□□□□□ -0.41
CLK1P49759 IMP3P2-201ENST00000489760 475 ntBASIC12.49□□□□□ -0.41
CLK1P49759 ORAOV1P1-201ENST00000503108 395 ntBASIC12.49□□□□□ -0.41
CLK1P49759 AC019193.1-201ENST00000506678 823 ntBASIC12.49□□□□□ -0.41
CLK1P49759 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC12.49□□□□□ -0.41
CLK1P49759 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLK1P49759 OR5BD1P-201ENST00000532527 817 ntBASIC12.49□□□□□ -0.41
CLK1P49759 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 MIR3907-201ENST00000579424 151 ntBASIC12.49□□□□□ -0.41
CLK1P49759 GAS7-216ENST00000583882 553 ntTSL 5 BASIC12.49□□□□□ -0.41
CLK1P49759 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.49□□□□□ -0.41
CLK1P49759 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 AC106872.11-201ENST00000605838 421 ntBASIC12.49□□□□□ -0.41
CLK1P49759 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC12.49□□□□□ -0.41
CLK1P49759 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CLK1P49759 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms