RNA–Protein interactions for RNA: ENST00000257548.9

USP30-201, Transcript of ubiquitin specific peptidase 30, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP30, Length 3,742 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP30-201ENST00000257548 NISCHQ9Y2I1 1504 aa22.88■■□□□ 1.25
USP30-201ENST00000257548 SUPT5HO00267 1087 aaKnown RBP20.89■□□□□ 0.93
USP30-201ENST00000257548 SHROOM4Q9ULL8 1493 aa20.72■□□□□ 0.91
USP30-201ENST00000257548 PCGF6Q9BYE7 350 aa20.54■□□□□ 0.88
USP30-201ENST00000257548 DCAF8L2P0C7V8 631 aa20.38■□□□□ 0.85
USP30-201ENST00000257548 PPARGC1BQ86YN6 1023 aaKnown RBP20.29■□□□□ 0.84
USP30-201ENST00000257548 HRCP23327 699 aa20.24■□□□□ 0.83
USP30-201ENST00000257548 EHMT2Q96KQ7 1210 aa19.98■□□□□ 0.79
USP30-201ENST00000257548 LOC105371045A0A1W2PR82 267 aa19.68■□□□□ 0.74
USP30-201ENST00000257548 PELP1Q8IZL8 1130 aaKnown RBP19.65■□□□□ 0.74
USP30-201ENST00000257548 CHIC1Q5VXU3 224 aa19.64■□□□□ 0.73
USP30-201ENST00000257548 FAM9AQ8IZU1 332 aaPredicted RBP19.57■□□□□ 0.72
USP30-201ENST00000257548 TTBK1Q5TCY1 1321 aaPredicted RBP19.39■□□□□ 0.69
USP30-201ENST00000257548 TRIM26Q12899 539 aaPredicted RBP19.38■□□□□ 0.69
USP30-201ENST00000257548 ZCCHC6Q5VYS8 1495 aaKnown RBP19.25■□□□□ 0.67
USP30-201ENST00000257548 ZEB1P37275 1124 aaPredicted RBP19.25■□□□□ 0.67
USP30-201ENST00000257548 SCAF1Q9H7N4 1312 aaKnown RBP19.2■□□□□ 0.66
USP30-201ENST00000257548 YTHDC1Q96MU7 727 aaKnown RBP19.19■□□□□ 0.66
USP30-201ENST00000257548 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
USP30-201ENST00000257548 CCER1Q8TC90 406 aaPredicted RBP19.17■□□□□ 0.66
USP30-201ENST00000257548 CENPBP07199 599 aaPredicted RBP19.11■□□□□ 0.65
USP30-201ENST00000257548 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
USP30-201ENST00000257548 GTF3C3Q9Y5Q9 886 aa19.02■□□□□ 0.64
USP30-201ENST00000257548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.01■□□□□ 0.63
USP30-201ENST00000257548 CCDC180Q9P1Z9 1646 aa18.98■□□□□ 0.63
USP30-201ENST00000257548 MYT1Q01538 1121 aa18.88■□□□□ 0.61
USP30-201ENST00000257548 NEUROD1Q13562 356 aa18.87■□□□□ 0.61
USP30-201ENST00000257548 ACIN1Q9UKV3 1341 aaKnown RBP18.85■□□□□ 0.61
USP30-201ENST00000257548 DIEXFQ68CQ4 756 aaKnown RBP18.83■□□□□ 0.6
USP30-201ENST00000257548 ABCC9O60706 1549 aa18.64■□□□□ 0.58
USP30-201ENST00000257548 DCAF1Q9Y4B6 1507 aa18.63■□□□□ 0.57
USP30-201ENST00000257548 RANGAP1P46060 587 aaPredicted RBP18.56■□□□□ 0.56
USP30-201ENST00000257548 SCRIBQ14160 1630 aa18.53■□□□□ 0.56
USP30-201ENST00000257548 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
USP30-201ENST00000257548 UBTFP17480 764 aaKnown RBP18.39■□□□□ 0.53
USP30-201ENST00000257548 APLP2Q06481 763 aa18.3■□□□□ 0.52
USP30-201ENST00000257548 RSF1Q96T23 1441 aaPredicted RBP18.29■□□□□ 0.52
USP30-201ENST00000257548 ZNF316A6NFI3 1004 aaPredicted RBP18.27■□□□□ 0.52
USP30-201ENST00000257548 BCANQ96GW7 911 aa18.27■□□□□ 0.51
USP30-201ENST00000257548 CECR2Q9BXF3 1484 aa18.22■□□□□ 0.51
USP30-201ENST00000257548 MIER1Q8N108 512 aa18.21■□□□□ 0.51
USP30-201ENST00000257548 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.5
USP30-201ENST00000257548 RB1CC1Q8TDY2 1594 aa18.1■□□□□ 0.49
USP30-201ENST00000257548 ERICH6Q7L0X2 663 aa18.08■□□□□ 0.48
USP30-201ENST00000257548 ITGAEP38570 1179 aa18.03■□□□□ 0.48
USP30-201ENST00000257548 MROH2BQ7Z745 1585 aa17.99■□□□□ 0.47
USP30-201ENST00000257548 NEFLP07196 543 aa17.99■□□□□ 0.47
USP30-201ENST00000257548 WIZO95785 1651 aa17.86■□□□□ 0.45
USP30-201ENST00000257548 BCL11AQ9H165 835 aa17.82■□□□□ 0.44
USP30-201ENST00000257548 FKBP8Q14318 412 aa17.8■□□□□ 0.44
USP30-201ENST00000257548 NACADO15069 1562 aa17.79■□□□□ 0.44
USP30-201ENST00000257548 ANP32EQ9BTT0 268 aa17.78■□□□□ 0.44
USP30-201ENST00000257548 SUPT16HQ9Y5B9 1047 aaKnown RBP17.78■□□□□ 0.44
USP30-201ENST00000257548 ATP1B4Q9UN42 357 aaPredicted RBP17.74■□□□□ 0.43
USP30-201ENST00000257548 CSRNP3Q8WYN3 585 aa17.68■□□□□ 0.42
USP30-201ENST00000257548 CNGB1Q14028 1251 aaPredicted RBP17.67■□□□□ 0.42
USP30-201ENST00000257548 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
USP30-201ENST00000257548 TRIM52Q96A61 297 aa17.65■□□□□ 0.42
USP30-201ENST00000257548 TSHZ2Q9NRE2 1034 aa17.63■□□□□ 0.41
USP30-201ENST00000257548 HIRIP3Q9BW71 556 aaPredicted RBP17.59■□□□□ 0.41
USP30-201ENST00000257548 DDX10Q13206 875 aaKnown RBP17.59■□□□□ 0.41
USP30-201ENST00000257548 CCDC88BA6NC98 1476 aa17.57■□□□□ 0.4
USP30-201ENST00000257548 IRX6P78412 446 aaPredicted RBP17.56■□□□□ 0.4
USP30-201ENST00000257548 SOGA1O94964 1423 aa17.55■□□□□ 0.4
USP30-201ENST00000257548 BAZ1AQ9NRL2 1556 aaPredicted RBP17.51■□□□□ 0.39
USP30-201ENST00000257548 KCNH8Q96L42 1107 aa17.5■□□□□ 0.39
USP30-201ENST00000257548 CEP162Q5TB80 1403 aa17.49■□□□□ 0.39
USP30-201ENST00000257548 RUSC2Q8N2Y8 1516 aa17.49■□□□□ 0.39
USP30-201ENST00000257548 CDK11AQ9UQ88 783 aaPredicted RBP17.45■□□□□ 0.38
USP30-201ENST00000257548 CLSPNQ9HAW4 1339 aa17.42■□□□□ 0.38
USP30-201ENST00000257548 NBR1Q14596 966 aa17.42■□□□□ 0.38
USP30-201ENST00000257548 RBM19Q9Y4C8 960 aaKnown RBP17.41■□□□□ 0.38
USP30-201ENST00000257548 ANP32CO43423 234 aa17.4■□□□□ 0.38
USP30-201ENST00000257548 FAM50AQ14320 339 aaKnown RBP17.39■□□□□ 0.37
USP30-201ENST00000257548 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
USP30-201ENST00000257548 POLR3GLQ9BT43 218 aa17.35■□□□□ 0.37
USP30-201ENST00000257548 HNRNPUQ00839 825 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP30-201ENST00000257548 TOP2AP11388 1531 aaKnown RBP17.32■□□□□ 0.36
USP30-201ENST00000257548 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
USP30-201ENST00000257548 RTL5Q5HYW3 569 aaPredicted RBP17.29■□□□□ 0.36
USP30-201ENST00000257548 UNC13AQ9UPW8 1703 aa17.28■□□□□ 0.36
USP30-201ENST00000257548 SENP3-EIF4A1A0A087X0R7 540 aa17.25■□□□□ 0.35
USP30-201ENST00000257548 WRNQ14191 1432 aaPredicted RBP eCLIP17.22■□□□□ 0.35
USP30-201ENST00000257548 BICRAQ9NZM4 1560 aa17.21■□□□□ 0.35
USP30-201ENST00000257548 TNIKQ9UKE5 1360 aa17.2■□□□□ 0.34
USP30-201ENST00000257548 SIN3AQ96ST3 1273 aa17.19■□□□□ 0.34
USP30-201ENST00000257548 CLIP1P30622 1438 aa17.19■□□□□ 0.34
USP30-201ENST00000257548 RTN4Q9NQC3 1192 aaKnown RBP17.18■□□□□ 0.34
USP30-201ENST00000257548 EIF4G1Q04637 1599 aaKnown RBP17.17■□□□□ 0.34
USP30-201ENST00000257548 NPM2Q86SE8 214 aaKnown RBP17.17■□□□□ 0.34
USP30-201ENST00000257548 FAM9BQ8IZU0 186 aa17.16■□□□□ 0.34
USP30-201ENST00000257548 P3H3Q8IVL6 736 aa17.15■□□□□ 0.34
USP30-201ENST00000257548 BAZ1BQ9UIG0 1483 aaKnown RBP17.13■□□□□ 0.33
USP30-201ENST00000257548 ATAD2BQ9ULI0 1458 aa17.11■□□□□ 0.33
USP30-201ENST00000257548 DEKP35659 375 aaKnown RBP17.1■□□□□ 0.33
USP30-201ENST00000257548 EIF5BO60841 1220 aaKnown RBP17.08■□□□□ 0.33
USP30-201ENST00000257548 B4GALNT3Q6L9W6 998 aa17.08■□□□□ 0.32
USP30-201ENST00000257548 KANK4Q5T7N3 995 aaPredicted RBP17.07■□□□□ 0.32
USP30-201ENST00000257548 SYNJ1O43426 1573 aa17.04■□□□□ 0.32
USP30-201ENST00000257548 GOLGA3Q08378 1498 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms