Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.32■■□□□ 1
CUEDC1Q9NWM3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CUEDC1Q9NWM3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CUEDC1Q9NWM3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CUEDC1Q9NWM3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CUEDC1Q9NWM3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 AL136162.1-201ENST00000607711 1078 ntBASIC21.31■■□□□ 1
CUEDC1Q9NWM3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CUEDC1Q9NWM3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 AC024257.2-201ENST00000549699 147 ntBASIC21.3■■□□□ 1
CUEDC1Q9NWM3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.3■■□□□ 1
CUEDC1Q9NWM3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 AL138724.1-201ENST00000606771 1088 ntBASIC21.29■■□□□ 1
CUEDC1Q9NWM3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.29■■□□□ 1
CUEDC1Q9NWM3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 PBX2P1-201ENST00000493219 1291 ntBASIC21.28■■□□□ 1
CUEDC1Q9NWM3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 AC011298.3-201ENST00000615796 283 ntBASIC21.28■■□□□ 1
CUEDC1Q9NWM3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CUEDC1Q9NWM3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 AC068473.5-201ENST00000616428 2072 ntBASIC21.27■■□□□ 1
CUEDC1Q9NWM3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.27■■□□□ 1
CUEDC1Q9NWM3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CUEDC1Q9NWM3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 MIR4767-201ENST00000582827 78 ntBASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 AC136469.2-201ENST00000623944 1028 ntBASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 C1orf229-201ENST00000623686 2258 ntBASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CUEDC1Q9NWM3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms