Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF4P78317 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RNF4P78317 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.45■□□□□ 0.86
RNF4P78317 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF4P78317 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF4P78317 AC126544.1-201ENST00000580842 1059 ntBASIC20.44■□□□□ 0.86
RNF4P78317 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF4P78317 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF4P78317 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
RNF4P78317 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
RNF4P78317 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RNF4P78317 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF4P78317 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
RNF4P78317 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF4P78317 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF4P78317 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF4P78317 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF4P78317 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RNF4P78317 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF4P78317 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF4P78317 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF4P78317 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF4P78317 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RNF4P78317 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RNF4P78317 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RNF4P78317 DUSP8P5-201ENST00000422884 1815 ntBASIC20.41■□□□□ 0.86
RNF4P78317 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF4P78317 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RNF4P78317 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF4P78317 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.41■□□□□ 0.86
RNF4P78317 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF4P78317 AC105265.2-201ENST00000467189 838 ntBASIC20.41■□□□□ 0.86
RNF4P78317 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RNF4P78317 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RNF4P78317 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RNF4P78317 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
RNF4P78317 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF4P78317 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
RNF4P78317 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RNF4P78317 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
RNF4P78317 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF4P78317 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF4P78317 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RNF4P78317 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF4P78317 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF4P78317 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF4P78317 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF4P78317 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF4P78317 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF4P78317 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF4P78317 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
RNF4P78317 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF4P78317 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF4P78317 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
RNF4P78317 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RNF4P78317 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
RNF4P78317 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF4P78317 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RNF4P78317 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF4P78317 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF4P78317 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RNF4P78317 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF4P78317 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF4P78317 ZNRF2P3-201ENST00000424200 374 ntBASIC20.38■□□□□ 0.85
RNF4P78317 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF4P78317 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF4P78317 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
RNF4P78317 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RNF4P78317 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.37■□□□□ 0.85
RNF4P78317 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF4P78317 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF4P78317 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 AP005435.1-201ENST00000529293 1178 ntBASIC20.37■□□□□ 0.85
RNF4P78317 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.37■□□□□ 0.85
RNF4P78317 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.37■□□□□ 0.85
RNF4P78317 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RNF4P78317 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms