Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN1AP35498 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.67■■□□□ 1.38
SCN1AP35498 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.67■■□□□ 1.38
SCN1AP35498 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN1AP35498 TSPY26P-201ENST00000476365 1326 ntBASIC23.67■■□□□ 1.38
SCN1AP35498 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.66■■□□□ 1.38
SCN1AP35498 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN1AP35498 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
SCN1AP35498 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN1AP35498 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN1AP35498 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SCN1AP35498 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
SCN1AP35498 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.66■■□□□ 1.38
SCN1AP35498 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.66■■□□□ 1.38
SCN1AP35498 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN1AP35498 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN1AP35498 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
SCN1AP35498 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
SCN1AP35498 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
SCN1AP35498 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.65■■□□□ 1.38
SCN1AP35498 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.65■■□□□ 1.38
SCN1AP35498 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.64■■□□□ 1.38
SCN1AP35498 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SCN1AP35498 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.64■■□□□ 1.38
SCN1AP35498 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SCN1AP35498 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.64■■□□□ 1.38
SCN1AP35498 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.64■■□□□ 1.38
SCN1AP35498 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SCN1AP35498 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SCN1AP35498 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
SCN1AP35498 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.64■■□□□ 1.37
SCN1AP35498 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.64■■□□□ 1.37
SCN1AP35498 IRS3P-201ENST00000223076 1006 ntBASIC23.64■■□□□ 1.37
SCN1AP35498 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SCN1AP35498 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
SCN1AP35498 AP005435.1-201ENST00000529293 1178 ntBASIC23.64■■□□□ 1.37
SCN1AP35498 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.64■■□□□ 1.37
SCN1AP35498 AC012414.1-201ENST00000556676 535 ntBASIC23.64■■□□□ 1.37
SCN1AP35498 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SCN1AP35498 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SCN1AP35498 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN1AP35498 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN1AP35498 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN1AP35498 MIR572-201ENST00000384983 95 ntBASIC23.63■■□□□ 1.37
SCN1AP35498 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SCN1AP35498 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN1AP35498 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN1AP35498 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.62■■□□□ 1.37
SCN1AP35498 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SCN1AP35498 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SCN1AP35498 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.62■■□□□ 1.37
SCN1AP35498 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.62■■□□□ 1.37
SCN1AP35498 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.62■■□□□ 1.37
SCN1AP35498 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.62■■□□□ 1.37
SCN1AP35498 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN1AP35498 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
SCN1AP35498 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN1AP35498 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN1AP35498 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.62■■□□□ 1.37
SCN1AP35498 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
SCN1AP35498 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
SCN1AP35498 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.61■■□□□ 1.37
SCN1AP35498 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SCN1AP35498 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SCN1AP35498 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SCN1AP35498 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SCN1AP35498 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.61■■□□□ 1.37
SCN1AP35498 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.61■■□□□ 1.37
SCN1AP35498 LINC01960-201ENST00000563759 1884 ntBASIC23.61■■□□□ 1.37
SCN1AP35498 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
SCN1AP35498 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 AL031602.1-201ENST00000633169 911 ntBASIC23.6■■□□□ 1.37
SCN1AP35498 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
SCN1AP35498 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.6■■□□□ 1.37
SCN1AP35498 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
SCN1AP35498 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.6■■□□□ 1.37
SCN1AP35498 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.6■■□□□ 1.37
SCN1AP35498 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.6■■□□□ 1.37
SCN1AP35498 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SCN1AP35498 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.6■■□□□ 1.37
SCN1AP35498 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
SCN1AP35498 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.59■■□□□ 1.37
SCN1AP35498 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.59■■□□□ 1.37
SCN1AP35498 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SCN1AP35498 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.58■■□□□ 1.37
SCN1AP35498 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SCN1AP35498 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SCN1AP35498 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
SCN1AP35498 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SCN1AP35498 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.57■■□□□ 1.36
SCN1AP35498 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms