Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL1P09341 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CXCL1P09341 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.08■□□□□ 0.33
CXCL1P09341 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL1P09341 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL1P09341 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.08■□□□□ 0.33
CXCL1P09341 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL1P09341 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.33
CXCL1P09341 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL1P09341 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.08■□□□□ 0.32
CXCL1P09341 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CXCL1P09341 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL1P09341 MACF1-219ENST00000484793 834 ntTSL 2 BASIC17.08■□□□□ 0.32
CXCL1P09341 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CXCL1P09341 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL1P09341 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CXCL1P09341 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.08■□□□□ 0.32
CXCL1P09341 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CXCL1P09341 AC010542.4-201ENST00000563151 1910 ntBASIC17.08■□□□□ 0.32
CXCL1P09341 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL1P09341 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL1P09341 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.07■□□□□ 0.32
CXCL1P09341 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL1P09341 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.07■□□□□ 0.32
CXCL1P09341 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CXCL1P09341 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL1P09341 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL1P09341 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.06■□□□□ 0.32
CXCL1P09341 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.06■□□□□ 0.32
CXCL1P09341 SMPD5-203ENST00000639008 1464 ntBASIC17.06■□□□□ 0.32
CXCL1P09341 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CXCL1P09341 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CXCL1P09341 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.06■□□□□ 0.32
CXCL1P09341 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.06■□□□□ 0.32
CXCL1P09341 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.06■□□□□ 0.32
CXCL1P09341 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL1P09341 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CXCL1P09341 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CXCL1P09341 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC17.05■□□□□ 0.32
CXCL1P09341 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.05■□□□□ 0.32
CXCL1P09341 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL1P09341 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CXCL1P09341 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CXCL1P09341 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
CXCL1P09341 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CXCL1P09341 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 RPS2P35-201ENST00000443417 897 ntBASIC17.04■□□□□ 0.32
CXCL1P09341 AC060814.1-201ENST00000554326 538 ntBASIC17.04■□□□□ 0.32
CXCL1P09341 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL1P09341 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL1P09341 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL1P09341 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CXCL1P09341 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL1P09341 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CXCL1P09341 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CXCL1P09341 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CXCL1P09341 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL1P09341 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL1P09341 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL1P09341 MIR3648-2-201ENST00000581792 180 ntBASIC17.03■□□□□ 0.32
CXCL1P09341 MIR3648-1-201ENST00000615959 180 ntBASIC17.03■□□□□ 0.32
CXCL1P09341 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.03■□□□□ 0.32
CXCL1P09341 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CXCL1P09341 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL1P09341 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.03■□□□□ 0.32
CXCL1P09341 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL1P09341 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
CXCL1P09341 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
CXCL1P09341 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL1P09341 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL1P09341 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CXCL1P09341 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL1P09341 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL1P09341 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms