Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CPSF4O95639 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
CPSF4O95639 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CPSF4O95639 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
CPSF4O95639 LINC01529-204ENST00000636474 1715 ntBASIC20.95■□□□□ 0.94
CPSF4O95639 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CPSF4O95639 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.95■□□□□ 0.94
CPSF4O95639 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CPSF4O95639 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CPSF4O95639 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
CPSF4O95639 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CPSF4O95639 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.95■□□□□ 0.94
CPSF4O95639 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.95■□□□□ 0.94
CPSF4O95639 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CPSF4O95639 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CPSF4O95639 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.95■□□□□ 0.94
CPSF4O95639 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CPSF4O95639 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CPSF4O95639 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.95■□□□□ 0.94
CPSF4O95639 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CPSF4O95639 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CPSF4O95639 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CPSF4O95639 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.94■□□□□ 0.94
CPSF4O95639 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.94■□□□□ 0.94
CPSF4O95639 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CPSF4O95639 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CPSF4O95639 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CPSF4O95639 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.94■□□□□ 0.94
CPSF4O95639 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.94■□□□□ 0.94
CPSF4O95639 AC092028.1-203ENST00000608262 953 ntBASIC20.94■□□□□ 0.94
CPSF4O95639 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CPSF4O95639 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CPSF4O95639 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF4O95639 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.93■□□□□ 0.94
CPSF4O95639 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CPSF4O95639 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
CPSF4O95639 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF4O95639 KRT125P-201ENST00000546827 989 ntBASIC20.93■□□□□ 0.94
CPSF4O95639 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CPSF4O95639 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CPSF4O95639 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF4O95639 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CPSF4O95639 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CPSF4O95639 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.92■□□□□ 0.94
CPSF4O95639 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.92■□□□□ 0.94
CPSF4O95639 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CPSF4O95639 FP325331.1-202ENST00000623531 1380 ntBASIC20.92■□□□□ 0.94
CPSF4O95639 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CPSF4O95639 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
CPSF4O95639 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF4O95639 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.92■□□□□ 0.94
CPSF4O95639 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF4O95639 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF4O95639 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.91■□□□□ 0.94
CPSF4O95639 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF4O95639 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.91■□□□□ 0.94
CPSF4O95639 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.91■□□□□ 0.94
CPSF4O95639 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.91■□□□□ 0.94
CPSF4O95639 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF4O95639 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 AC080038.3-201ENST00000623346 1952 ntBASIC20.9■□□□□ 0.94
CPSF4O95639 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 AC087742.1-201ENST00000575880 1738 ntBASIC20.9■□□□□ 0.94
CPSF4O95639 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 MTDHP2-201ENST00000601468 714 ntBASIC20.9■□□□□ 0.94
CPSF4O95639 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF4O95639 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.9■□□□□ 0.94
CPSF4O95639 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms