Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 NDUFA11-204ENST00000591341 403 ntTSL 214.58□□□□□ -0.089e-6■■■■□ 21.6
SMNDC1O75940 NDUFA11-206ENST00000593233 657 ntTSL 314.58□□□□□ -0.089e-6■■■■□ 21.6
SMNDC1O75940 KHSRP-209ENST00000597704 706 ntTSL 514.22□□□□□ -0.139e-6■■■■□ 21.6
SMNDC1O75940 GANAB-214ENST00000534613 737 ntTSL 514.17□□□□□ -0.149e-6■■■■□ 21.6
SMNDC1O75940 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.169e-6■■■■□ 21.6
SMNDC1O75940 GSE1-214ENST00000574293 777 ntTSL 313.93□□□□□ -0.189e-6■■■■□ 21.6
SMNDC1O75940 GNA11-204ENST00000587636 733 ntTSL 513.13□□□□□ -0.319e-6■■■■□ 21.6
SMNDC1O75940 HNRNPL-208ENST00000600233 659 ntTSL 513.04□□□□□ -0.329e-6■■■■□ 21.6
SMNDC1O75940 TFR2-209ENST00000473963 771 ntTSL 312.83□□□□□ -0.369e-6■■■■□ 21.6
SMNDC1O75940 TUBGCP6-207ENST00000491449 4044 ntTSL 512.68□□□□□ -0.389e-6■■■■□ 21.6
SMNDC1O75940 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC12.4□□□□□ -0.431e-7■■■■□ 21.6
SMNDC1O75940 PHF5A-203ENST00000491254 292 ntTSL 312.23□□□□□ -0.459e-6■■■■□ 21.6
SMNDC1O75940 GANAB-207ENST00000526732 824 ntTSL 211.15□□□□□ -0.629e-6■■■■□ 21.6
SMNDC1O75940 TANGO2-209ENST00000432198 585 ntTSL 410.88□□□□□ -0.676e-9■■■■□ 21.6
SMNDC1O75940 IK-201ENST00000417647 1962 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.759e-6■■■■□ 21.6
SMNDC1O75940 GANAB-213ENST00000534422 702 ntTSL 510.36□□□□□ -0.759e-6■■■■□ 21.6
SMNDC1O75940 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.859e-6■■■■□ 21.6
SMNDC1O75940 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.975e-46■■■■□ 21.6
SMNDC1O75940 ANKRD11-215ENST00000568512 294 ntTSL 28.27□□□□□ -1.099e-6■■■■□ 21.6
SMNDC1O75940 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC8.26□□□□□ -1.099e-6■■■■□ 21.6
SMNDC1O75940 AC010320.4-201ENST00000594379 1905 ntTSL 2 BASIC7.95□□□□□ -1.149e-6■■■■□ 21.6
SMNDC1O75940 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC7.93□□□□□ -1.149e-6■■■■□ 21.6
SMNDC1O75940 IK-209ENST00000515592 1964 ntTSL 26.86□□□□□ -1.319e-6■■■■□ 21.6
SMNDC1O75940 PHF5A-202ENST00000459687 504 ntTSL 35.63□□□□□ -1.519e-6■■■■□ 21.6
SMNDC1O75940 RNU6-524P-201ENST00000384270 107 ntBASIC2.21□□□□□ -2.069e-6■■■■□ 21.6
SMNDC1O75940 SLC16A3-212ENST00000581642 557 ntTSL 416.21■□□□□ 0.197e-7■■■■□ 21.5
SMNDC1O75940 HSPA9-210ENST00000508003 582 ntTSL 210.13□□□□□ -0.791e-323■■■■□ 21.5
SMNDC1O75940 SNORD63-201ENST00000384262 68 ntBASIC4.55□□□□□ -1.681e-323■■■■□ 21.5
SMNDC1O75940 NEU1-208ENST00000491768 1875 ntTSL 518.6■□□□□ 0.573e-7■■■■□ 21.5
SMNDC1O75940 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.453e-7■■■■□ 21.5
SMNDC1O75940 NEU1-207ENST00000480384 2214 ntTSL 217.43■□□□□ 0.383e-7■■■■□ 21.5
SMNDC1O75940 NEU1-209ENST00000495807 4616 ntTSL 213.34□□□□□ -0.273e-7■■■■□ 21.5
SMNDC1O75940 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.65■□□□□ 0.743e-7■■■■□ 21.5
SMNDC1O75940 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.48■□□□□ 0.713e-7■■■■□ 21.5
SMNDC1O75940 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.643e-7■■■■□ 21.5
SMNDC1O75940 TRAF4-216ENST00000586813 789 ntTSL 317.49■□□□□ 0.393e-7■■■■□ 21.5
SMNDC1O75940 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.13e-6■■■■□ 21.5
SMNDC1O75940 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC11.15□□□□□ -0.623e-7■■■■□ 21.5
SMNDC1O75940 ORC2-201ENST00000234296 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.721e-8■■■■□ 21.5
SMNDC1O75940 SLC16A3-205ENST00000578574 958 ntTSL 221.43■■□□□ 1.027e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-220ENST00000584781 562 ntTSL 420.39■□□□□ 0.857e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-208ENST00000579572 863 ntTSL 317.99■□□□□ 0.477e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-206ENST00000578684 866 ntTSL 316.37■□□□□ 0.217e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-217ENST00000583237 808 ntTSL 316.28■□□□□ 0.27e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-219ENST00000584689 1033 ntTSL 216.24■□□□□ 0.197e-7■■■■□ 21.4
SMNDC1O75940 SLC16A3-203ENST00000577650 545 ntTSL 315.49■□□□□ 0.077e-7■■■■□ 21.4
SMNDC1O75940 SNORD11-201ENST00000459124 84 ntBASIC3.45□□□□□ -1.861e-26■■■■□ 21.4
SMNDC1O75940 RPL10-217ENST00000492572 1656 ntTSL 515.73■□□□□ 0.111e-7■■■■□ 21.4
SMNDC1O75940 RPL10-218ENST00000618723 2210 ntTSL 5 BASIC12.86□□□□□ -0.351e-7■■■■□ 21.4
SMNDC1O75940 RPL10-204ENST00000424325 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.41e-7■■■■□ 21.4
SMNDC1O75940 RPL10-201ENST00000344746 2278 ntAPPRIS P1 TSL 1 (best)11.99□□□□□ -0.491e-7■■■■□ 21.4
SMNDC1O75940 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51e-7■■■■□ 21.4
SMNDC1O75940 RPL10-210ENST00000458500 585 ntTSL 1 (best)11.89□□□□□ -0.511e-7■■■■□ 21.4
SMNDC1O75940 RPL10-215ENST00000489200 1519 ntTSL 211.26□□□□□ -0.611e-7■■■■□ 21.4
SMNDC1O75940 RPL10-214ENST00000485196 839 ntTSL 210.67□□□□□ -0.71e-7■■■■□ 21.4
SMNDC1O75940 RPL10-213ENST00000482732 1731 ntTSL 1 (best)10.64□□□□□ -0.711e-7■■■■□ 21.4
SMNDC1O75940 RPL10-207ENST00000436473 657 ntTSL 210.46□□□□□ -0.731e-7■■■■□ 21.4
SMNDC1O75940 RPL10-211ENST00000467168 802 ntTSL 29.61□□□□□ -0.871e-7■■■■□ 21.4
SMNDC1O75940 RPL10-216ENST00000491035 1369 ntTSL 59.55□□□□□ -0.881e-7■■■■□ 21.4
SMNDC1O75940 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.061e-6■■■■□ 21.4
SMNDC1O75940 CBFA2T3-204ENST00000563640 664 ntTSL 214.05□□□□□ -0.161e-6■■■■□ 21.4
SMNDC1O75940 SNORA2B-201ENST00000384583 137 ntBASIC2.26□□□□□ -2.052e-20■■■■□ 21.4
SMNDC1O75940 HNRNPH1-248ENST00000524179 598 ntTSL 213.26□□□□□ -0.292e-29■■■■□ 21.4
SMNDC1O75940 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.011e-6■■■■□ 21.4
SMNDC1O75940 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.82□□□□□ -0.041e-6■■■■□ 21.4
SMNDC1O75940 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.63□□□□□ -0.071e-6■■■■□ 21.4
SMNDC1O75940 SETD5-227ENST00000492939 634 ntTSL 210.53□□□□□ -0.723e-7■■■■□ 21.4
SMNDC1O75940 SETD5-213ENST00000459941 1074 ntTSL 510.34□□□□□ -0.753e-7■■■■□ 21.4
SMNDC1O75940 DAZAP1-207ENST00000589484 3414 ntTSL 213.55□□□□□ -0.248e-8■■■■□ 21.3
SMNDC1O75940 RNU6-7-201ENST00000364784 107 ntBASIC4.85□□□□□ -1.635e-12■■■■□ 21.3
SMNDC1O75940 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC8.3□□□□□ -1.087e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-207ENST00000536012 2447 ntTSL 1 (best)8.21□□□□□ -1.17e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-214ENST00000543225 2407 ntTSL 1 (best)7.49□□□□□ -1.217e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-215ENST00000543229 2475 ntTSL 26.97□□□□□ -1.297e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.397e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.25□□□□□ -1.417e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-213ENST00000541012 2432 ntTSL 1 (best)5.74□□□□□ -1.497e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-205ENST00000483264 487 ntTSL 55.29□□□□□ -1.567e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-211ENST00000539539 3224 ntTSL 24.65□□□□□ -1.677e-11■■■■□ 21.3
SMNDC1O75940 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)3.47□□□□□ -1.857e-11■■■■□ 21.3
SMNDC1O75940 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.39■□□□□ 0.053e-7■■■■□ 21.3
SMNDC1O75940 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.073e-7■■■■□ 21.3
SMNDC1O75940 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.946e-7■■■■□ 21.3
SMNDC1O75940 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.826e-7■■■■□ 21.3
SMNDC1O75940 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.666e-7■■■■□ 21.3
SMNDC1O75940 PLXNB2-203ENST00000425954 609 ntTSL 215.66■□□□□ 0.18e-6■■■■□ 21.3
SMNDC1O75940 ACTB-211ENST00000480301 657 ntTSL 1 (best)18.71■□□□□ 0.593e-14■■■■□ 21.3
SMNDC1O75940 ACTB-202ENST00000414620 561 ntTSL 414.04□□□□□ -0.163e-14■■■■□ 21.3
SMNDC1O75940 ACTB-206ENST00000443528 569 ntTSL 414.03□□□□□ -0.163e-14■■■■□ 21.3
SMNDC1O75940 SCARNA6-201ENST00000515982 265 ntBASIC6.25□□□□□ -1.413e-76■■■■□ 21.2
SMNDC1O75940 TRAF4-214ENST00000580073 449 ntTSL 312.1□□□□□ -0.471e-7■■■■□ 21.2
SMNDC1O75940 RABGGTB-214ENST00000497648 1319 ntTSL 29.2□□□□□ -0.941e-14■■■■□ 21.2
SMNDC1O75940 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.67■□□□□ 0.96e-8■■■■□ 21.2
SMNDC1O75940 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.27■□□□□ 0.836e-8■■■■□ 21.2
SMNDC1O75940 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.3■□□□□ 0.366e-8■■■■□ 21.2
SMNDC1O75940 MTA1-208ENST00000438610 2144 ntTSL 1 (best)17.25■□□□□ 0.356e-8■■■■□ 21.2
SMNDC1O75940 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.276e-8■■■■□ 21.2
SMNDC1O75940 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.82■□□□□ 0.128e-6■■■■□ 21.1
SMNDC1O75940 WASH2P-201ENST00000453662 1684 ntBASIC12.72□□□□□ -0.378e-6■■■■□ 21.1
SMNDC1O75940 CD81-217ENST00000533417 444 ntTSL 315.61■□□□□ 0.094e-6■■■■□ 21.1
Retrieved 100 of 11,362 protein–RNA pairs in 204.2 ms