Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 ELN-216ENST00000429192 3298 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
RAB40CQ96S21 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RAB40CQ96S21 HPS1-201ENST00000325103 3703 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
RAB40CQ96S21 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
RAB40CQ96S21 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RAB40CQ96S21 AC020912.1-201ENST00000638312 5059 ntTSL 5 BASIC10.8□□□□□ -0.68
RAB40CQ96S21 PER1-211ENST00000581082 4521 ntTSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PITRM1-201ENST00000224949 3450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 STRADA-202ENST00000336174 2255 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 RABL2B-201ENST00000354869 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 DDO-201ENST00000368923 1953 ntTSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ARHGEF2-203ENST00000361247 4149 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 STRADA-204ENST00000392950 2778 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 SLC25A5-AS1-203ENST00000446986 1874 ntTSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ANGEL2-208ENST00000535388 2517 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PPFIA4-210ENST00000599966 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 MIR663B-201ENST00000408361 115 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AC098934.1-203ENST00000442868 1262 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 FAM86HP-204ENST00000513466 959 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 FAM213AP2-201ENST00000521579 683 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 FAM8A2P-201ENST00000528813 1142 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 NPIPP1-202ENST00000534799 1214 ntTSL 3 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 RIT1-205ENST00000539040 919 ntTSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AC104982.3-201ENST00000581995 514 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AL096828.3-201ENST00000615354 462 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 AC022748.3-201ENST00000621828 275 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 INTS8-217ENST00000523731 4633 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 AJ239328.1-201ENST00000626237 4807 ntTSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 KRIT1-201ENST00000340022 4553 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 GRIK1-203ENST00000389125 3140 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 CYFIP2-222ENST00000620254 4124 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 KCNH8-201ENST00000328405 5137 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 APOBEC3B-203ENST00000402182 1844 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 TUT1-202ENST00000308436 2826 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 PKP4P1-201ENST00000426801 2158 ntBASIC10.79□□□□□ -0.68
RAB40CQ96S21 TTC16-201ENST00000373289 2897 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RAB40CQ96S21 STAG1-203ENST00000434713 5064 ntTSL 5 BASIC10.79□□□□□ -0.68
RAB40CQ96S21 LRRC8E-201ENST00000306708 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ZSCAN5C-202ENST00000534327 1892 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 AP003108.3-201ENST00000623765 2234 ntBASIC10.78□□□□□ -0.68
RAB40CQ96S21 ALK-205ENST00000618119 4646 ntTSL 5 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 MIGA2-201ENST00000358369 3637 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ZNF621-201ENST00000310898 2404 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 RDH16-202ENST00000398138 2409 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 AIPL1-201ENST00000250087 2783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 IQCB1-202ENST00000349820 1919 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 KRT18P40-201ENST00000599859 1571 ntBASIC10.78□□□□□ -0.68
RAB40CQ96S21 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 TSPEAR-203ENST00000613245 3524 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ZFHX2-AS1-201ENST00000553985 2322 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 PLEKHG4-204ENST00000427155 4455 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 AC136604.2-201ENST00000500262 1966 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 PLK4-210ENST00000514379 3060 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ZUFSP-202ENST00000368576 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RAB40CQ96S21 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC10.78□□□□□ -0.68
RAB40CQ96S21 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms