Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 UBR7-201ENST00000013070 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 GRIK5-202ENST00000301218 3310 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 AMACR-201ENST00000335606 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 ACTG1P2-201ENST00000415776 1125 ntBASIC12.71□□□□□ -0.37
CLK1P49759 PPP1R2P4-201ENST00000424051 595 ntBASIC12.71□□□□□ -0.37
CLK1P49759 ACTG1P11-201ENST00000425411 1125 ntBASIC12.71□□□□□ -0.37
CLK1P49759 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 NAGK-204ENST00000443872 878 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC12.71□□□□□ -0.37
CLK1P49759 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 NAT9-220ENST00000582870 896 ntTSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 MEG3_2.1-201ENST00000611456 105 ntBASIC12.71□□□□□ -0.37
CLK1P49759 GPR182-203ENST00000622922 591 ntBASIC12.71□□□□□ -0.37
CLK1P49759 AC079336.7-201ENST00000623428 1078 ntBASIC12.71□□□□□ -0.37
CLK1P49759 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.71□□□□□ -0.37
CLK1P49759 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.71□□□□□ -0.37
CLK1P49759 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CLK1P49759 AL139424.3-202ENST00000641619 917 ntBASIC12.71□□□□□ -0.37
CLK1P49759 ARHGEF10-203ENST00000398560 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLK1P49759 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC12.71□□□□□ -0.38
CLK1P49759 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 LVRN-202ENST00000395528 4544 ntTSL 5 BASIC12.71□□□□□ -0.38
CLK1P49759 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
CLK1P49759 CDCA2-202ENST00000380665 3565 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
CLK1P49759 SV2A-202ENST00000369146 4416 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 LINC00664-203ENST00000599078 3760 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 SLC36A4-201ENST00000326402 6012 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 TP73-206ENST00000378288 5120 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLK1P49759 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.38
CLK1P49759 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 AC020917.4-201ENST00000623994 1999 ntBASIC12.7□□□□□ -0.38
CLK1P49759 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 COL8A1-202ENST00000273342 3029 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 FAM90A2P-201ENST00000511144 1395 ntBASIC12.7□□□□□ -0.38
CLK1P49759 FAM90A25P-201ENST00000528404 1395 ntBASIC12.7□□□□□ -0.38
CLK1P49759 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 AC004241.1-201ENST00000547799 3299 ntTSL 5 BASIC12.7□□□□□ -0.38
CLK1P49759 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CLK1P49759 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
CLK1P49759 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 KCNV1-202ENST00000524391 6979 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 KCNQ3-201ENST00000388996 11510 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
CLK1P49759 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CLK1P49759 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 AC073869.2-201ENST00000417338 1026 ntBASIC12.7□□□□□ -0.38
CLK1P49759 CMC1-204ENST00000423894 549 ntTSL 2 BASIC12.7□□□□□ -0.38
CLK1P49759 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CLK1P49759 DNAJB1P1-201ENST00000429417 1024 ntBASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms