RNA–Protein interactions for RNA: ENST00000361716.7

VAMP1-201, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best) BASIC

Gene VAMP1, Length 3,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-201ENST00000361716 NISCHQ9Y2I1 1504 aa24.4■■□□□ 1.5
VAMP1-201ENST00000361716 SHROOM4Q9ULL8 1493 aa21.65■■□□□ 1.06
VAMP1-201ENST00000361716 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
VAMP1-201ENST00000361716 HRCP23327 699 aa21.28■■□□□ 1
VAMP1-201ENST00000361716 PPARGC1BQ86YN6 1023 aaKnown RBP21.26■□□□□ 0.99
VAMP1-201ENST00000361716 DCAF8L2P0C7V8 631 aa21.23■□□□□ 0.99
VAMP1-201ENST00000361716 CCDC180Q9P1Z9 1646 aa21.21■□□□□ 0.99
VAMP1-201ENST00000361716 PCGF6Q9BYE7 350 aa21.2■□□□□ 0.98
VAMP1-201ENST00000361716 PELP1Q8IZL8 1130 aaKnown RBP20.73■□□□□ 0.91
VAMP1-201ENST00000361716 ZCCHC6Q5VYS8 1495 aaKnown RBP20.6■□□□□ 0.89
VAMP1-201ENST00000361716 EHMT2Q96KQ7 1210 aa20.5■□□□□ 0.87
VAMP1-201ENST00000361716 CHIC1Q5VXU3 224 aa20.43■□□□□ 0.86
VAMP1-201ENST00000361716 LOC105371045A0A1W2PR82 267 aa20.37■□□□□ 0.85
VAMP1-201ENST00000361716 SCAF1Q9H7N4 1312 aaKnown RBP20.36■□□□□ 0.85
VAMP1-201ENST00000361716 ABCC9O60706 1549 aa20.35■□□□□ 0.85
VAMP1-201ENST00000361716 MYO15BQ96JP2 1530 aa20.35■□□□□ 0.85
VAMP1-201ENST00000361716 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
VAMP1-201ENST00000361716 FAM9AQ8IZU1 332 aaPredicted RBP20.17■□□□□ 0.82
VAMP1-201ENST00000361716 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.8
VAMP1-201ENST00000361716 MYT1Q01538 1121 aa19.9■□□□□ 0.78
VAMP1-201ENST00000361716 ZEB1P37275 1124 aaPredicted RBP19.89■□□□□ 0.78
VAMP1-201ENST00000361716 GTF3C3Q9Y5Q9 886 aa19.85■□□□□ 0.77
VAMP1-201ENST00000361716 TTBK1Q5TCY1 1321 aaPredicted RBP19.85■□□□□ 0.77
VAMP1-201ENST00000361716 NEUROD1Q13562 356 aa19.82■□□□□ 0.76
VAMP1-201ENST00000361716 ACIN1Q9UKV3 1341 aaKnown RBP19.77■□□□□ 0.76
VAMP1-201ENST00000361716 TRIM41Q8WV44 630 aa19.7■□□□□ 0.74
VAMP1-201ENST00000361716 CENPBP07199 599 aaPredicted RBP19.67■□□□□ 0.74
VAMP1-201ENST00000361716 YTHDC1Q96MU7 727 aaKnown RBP19.67■□□□□ 0.74
VAMP1-201ENST00000361716 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
VAMP1-201ENST00000361716 NACADO15069 1562 aa19.59■□□□□ 0.73
VAMP1-201ENST00000361716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.57■□□□□ 0.72
VAMP1-201ENST00000361716 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
VAMP1-201ENST00000361716 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
VAMP1-201ENST00000361716 DIEXFQ68CQ4 756 aaKnown RBP19.49■□□□□ 0.71
VAMP1-201ENST00000361716 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
VAMP1-201ENST00000361716 UNC13AQ9UPW8 1703 aa19.21■□□□□ 0.67
VAMP1-201ENST00000361716 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
VAMP1-201ENST00000361716 CECR2Q9BXF3 1484 aa19.12■□□□□ 0.65
VAMP1-201ENST00000361716 RSF1Q96T23 1441 aaPredicted RBP19.02■□□□□ 0.63
VAMP1-201ENST00000361716 UBTFP17480 764 aaKnown RBP18.97■□□□□ 0.63
VAMP1-201ENST00000361716 MIER1Q8N108 512 aa18.96■□□□□ 0.63
VAMP1-201ENST00000361716 BCL11AQ9H165 835 aa18.94■□□□□ 0.62
VAMP1-201ENST00000361716 ZNF316A6NFI3 1004 aaPredicted RBP18.93■□□□□ 0.62
VAMP1-201ENST00000361716 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
VAMP1-201ENST00000361716 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
VAMP1-201ENST00000361716 MROH2BQ7Z745 1585 aa18.87■□□□□ 0.61
VAMP1-201ENST00000361716 BCANQ96GW7 911 aa18.78■□□□□ 0.6
VAMP1-201ENST00000361716 WIZO95785 1651 aa18.76■□□□□ 0.59
VAMP1-201ENST00000361716 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
VAMP1-201ENST00000361716 ANP32EQ9BTT0 268 aa18.74■□□□□ 0.59
VAMP1-201ENST00000361716 SMARCA4P51532 1647 aa18.72■□□□□ 0.59
VAMP1-201ENST00000361716 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
VAMP1-201ENST00000361716 APLP2Q06481 763 aa18.66■□□□□ 0.58
VAMP1-201ENST00000361716 SUPT16HQ9Y5B9 1047 aaKnown RBP18.65■□□□□ 0.58
VAMP1-201ENST00000361716 TSHZ2Q9NRE2 1034 aa18.6■□□□□ 0.57
VAMP1-201ENST00000361716 PEG3Q9GZU2 1588 aa18.57■□□□□ 0.56
VAMP1-201ENST00000361716 EIF4G1Q04637 1599 aaKnown RBP18.55■□□□□ 0.56
VAMP1-201ENST00000361716 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
VAMP1-201ENST00000361716 ITGAEP38570 1179 aa18.51■□□□□ 0.55
VAMP1-201ENST00000361716 SMARCA2P51531 1590 aa18.41■□□□□ 0.54
VAMP1-201ENST00000361716 FKBP8Q14318 412 aa18.38■□□□□ 0.53
VAMP1-201ENST00000361716 ERICH6Q7L0X2 663 aa18.38■□□□□ 0.53
VAMP1-201ENST00000361716 CEP162Q5TB80 1403 aa18.33■□□□□ 0.52
VAMP1-201ENST00000361716 CCDC88BA6NC98 1476 aa18.33■□□□□ 0.52
VAMP1-201ENST00000361716 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
VAMP1-201ENST00000361716 SOGA1O94964 1423 aa18.3■□□□□ 0.52
VAMP1-201ENST00000361716 NEFLP07196 543 aa18.29■□□□□ 0.52
VAMP1-201ENST00000361716 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
VAMP1-201ENST00000361716 KCNH8Q96L42 1107 aa18.26■□□□□ 0.51
VAMP1-201ENST00000361716 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
VAMP1-201ENST00000361716 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
VAMP1-201ENST00000361716 ATP1B4Q9UN42 357 aaPredicted RBP18.24■□□□□ 0.51
VAMP1-201ENST00000361716 RBM19Q9Y4C8 960 aaKnown RBP18.23■□□□□ 0.51
VAMP1-201ENST00000361716 PRKCSHP14314 528 aaPredicted RBP18.2■□□□□ 0.5
VAMP1-201ENST00000361716 CLSPNQ9HAW4 1339 aa18.19■□□□□ 0.5
VAMP1-201ENST00000361716 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
VAMP1-201ENST00000361716 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
VAMP1-201ENST00000361716 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
VAMP1-201ENST00000361716 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
VAMP1-201ENST00000361716 HIRIP3Q9BW71 556 aaPredicted RBP18.08■□□□□ 0.49
VAMP1-201ENST00000361716 IRX6P78412 446 aaPredicted RBP18.07■□□□□ 0.48
VAMP1-201ENST00000361716 TNIKQ9UKE5 1360 aa18.06■□□□□ 0.48
VAMP1-201ENST00000361716 DDX10Q13206 875 aaKnown RBP18.03■□□□□ 0.48
VAMP1-201ENST00000361716 CC2D2AQ9P2K1 1620 aa18■□□□□ 0.47
VAMP1-201ENST00000361716 CLIP1P30622 1438 aa17.99■□□□□ 0.47
VAMP1-201ENST00000361716 MSH5O43196 834 aa17.98■□□□□ 0.47
VAMP1-201ENST00000361716 NBR1Q14596 966 aa17.98■□□□□ 0.47
VAMP1-201ENST00000361716 CNGB1Q14028 1251 aaPredicted RBP17.94■□□□□ 0.46
VAMP1-201ENST00000361716 FAM50AQ14320 339 aaKnown RBP17.93■□□□□ 0.46
VAMP1-201ENST00000361716 CDK11AQ9UQ88 783 aaPredicted RBP17.92■□□□□ 0.46
VAMP1-201ENST00000361716 DEKP35659 375 aaKnown RBP17.91■□□□□ 0.46
VAMP1-201ENST00000361716 GOLGA3Q08378 1498 aa17.9■□□□□ 0.46
VAMP1-201ENST00000361716 P3H3Q8IVL6 736 aa17.89■□□□□ 0.46
VAMP1-201ENST00000361716 KANK4Q5T7N3 995 aaPredicted RBP17.89■□□□□ 0.45
VAMP1-201ENST00000361716 ANO8Q9HCE9 1232 aaPredicted RBP17.89■□□□□ 0.45
VAMP1-201ENST00000361716 WRNQ14191 1432 aaPredicted RBP eCLIP17.88■□□□□ 0.45
VAMP1-201ENST00000361716 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
VAMP1-201ENST00000361716 PRDM2Q13029 1718 aa17.85■□□□□ 0.45
VAMP1-201ENST00000361716 NESP48681 1621 aa17.85■□□□□ 0.45
VAMP1-201ENST00000361716 RTN4Q9NQC3 1192 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms