RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 NISCHQ9Y2I1 1504 aa24.85■■□□□ 1.57
COL8A1-202ENST00000273342 SHROOM4Q9ULL8 1493 aa22.36■■□□□ 1.17
COL8A1-202ENST00000273342 SUPT5HO00267 1087 aaKnown RBP22.18■■□□□ 1.14
COL8A1-202ENST00000273342 DCAF8L2P0C7V8 631 aa21.73■■□□□ 1.07
COL8A1-202ENST00000273342 HRCP23327 699 aa21.64■■□□□ 1.05
COL8A1-202ENST00000273342 PCGF6Q9BYE7 350 aa21.61■■□□□ 1.05
COL8A1-202ENST00000273342 PPARGC1BQ86YN6 1023 aaKnown RBP21.52■■□□□ 1.04
COL8A1-202ENST00000273342 MYO15BQ96JP2 1530 aa21.49■■□□□ 1.03
COL8A1-202ENST00000273342 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
COL8A1-202ENST00000273342 LOC105371045A0A1W2PR82 267 aa21.16■□□□□ 0.98
COL8A1-202ENST00000273342 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
COL8A1-202ENST00000273342 TRIM26Q12899 539 aaPredicted RBP20.74■□□□□ 0.91
COL8A1-202ENST00000273342 EHMT2Q96KQ7 1210 aa20.72■□□□□ 0.91
COL8A1-202ENST00000273342 DCAF1Q9Y4B6 1507 aa20.69■□□□□ 0.9
COL8A1-202ENST00000273342 FAM9AQ8IZU1 332 aaPredicted RBP20.6■□□□□ 0.89
COL8A1-202ENST00000273342 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
COL8A1-202ENST00000273342 SCAF1Q9H7N4 1312 aaKnown RBP20.42■□□□□ 0.86
COL8A1-202ENST00000273342 TRIM41Q8WV44 630 aa20.38■□□□□ 0.85
COL8A1-202ENST00000273342 ZEB1P37275 1124 aaPredicted RBP20.34■□□□□ 0.85
COL8A1-202ENST00000273342 PELP1Q8IZL8 1130 aaKnown RBP20.21■□□□□ 0.83
COL8A1-202ENST00000273342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.82
COL8A1-202ENST00000273342 TTBK1Q5TCY1 1321 aaPredicted RBP20.11■□□□□ 0.81
COL8A1-202ENST00000273342 CCER1Q8TC90 406 aaPredicted RBP20.03■□□□□ 0.8
COL8A1-202ENST00000273342 RSF1Q96T23 1441 aaPredicted RBP20.03■□□□□ 0.8
COL8A1-202ENST00000273342 NEUROD1Q13562 356 aa20.01■□□□□ 0.79
COL8A1-202ENST00000273342 ACIN1Q9UKV3 1341 aaKnown RBP19.93■□□□□ 0.78
COL8A1-202ENST00000273342 ABCC9O60706 1549 aa19.92■□□□□ 0.78
COL8A1-202ENST00000273342 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
COL8A1-202ENST00000273342 SCRIBQ14160 1630 aa19.91■□□□□ 0.78
COL8A1-202ENST00000273342 GTF3C3Q9Y5Q9 886 aa19.89■□□□□ 0.78
COL8A1-202ENST00000273342 DIEXFQ68CQ4 756 aaKnown RBP19.84■□□□□ 0.77
COL8A1-202ENST00000273342 YTHDC1Q96MU7 727 aaKnown RBP19.74■□□□□ 0.75
COL8A1-202ENST00000273342 CENPBP07199 599 aaPredicted RBP19.72■□□□□ 0.75
COL8A1-202ENST00000273342 CECR2Q9BXF3 1484 aa19.65■□□□□ 0.74
COL8A1-202ENST00000273342 MROH2BQ7Z745 1585 aa19.52■□□□□ 0.72
COL8A1-202ENST00000273342 UBTFP17480 764 aaKnown RBP19.46■□□□□ 0.71
COL8A1-202ENST00000273342 ZNF316A6NFI3 1004 aaPredicted RBP19.44■□□□□ 0.7
COL8A1-202ENST00000273342 WIZO95785 1651 aa19.43■□□□□ 0.7
COL8A1-202ENST00000273342 HNRNPUL2Q1KMD3 747 aaKnown RBP19.43■□□□□ 0.7
COL8A1-202ENST00000273342 MIER1Q8N108 512 aa19.4■□□□□ 0.7
COL8A1-202ENST00000273342 CEP162Q5TB80 1403 aa19.35■□□□□ 0.69
COL8A1-202ENST00000273342 ABCC8Q09428 1581 aa19.34■□□□□ 0.69
COL8A1-202ENST00000273342 RANGAP1P46060 587 aaPredicted RBP19.33■□□□□ 0.68
COL8A1-202ENST00000273342 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
COL8A1-202ENST00000273342 PABPN1Q86U42 306 aaKnown RBP eCLIP19.33■□□□□ 0.68
COL8A1-202ENST00000273342 SOGA1O94964 1423 aa19.3■□□□□ 0.68
COL8A1-202ENST00000273342 MYT1Q01538 1121 aa19.23■□□□□ 0.67
COL8A1-202ENST00000273342 CSRNP3Q8WYN3 585 aa19.22■□□□□ 0.67
COL8A1-202ENST00000273342 RUSC2Q8N2Y8 1516 aa19.21■□□□□ 0.67
COL8A1-202ENST00000273342 WRNQ14191 1432 aaPredicted RBP eCLIP19.18■□□□□ 0.66
COL8A1-202ENST00000273342 TNIKQ9UKE5 1360 aa19.14■□□□□ 0.65
COL8A1-202ENST00000273342 BAZ1AQ9NRL2 1556 aaPredicted RBP19.09■□□□□ 0.65
COL8A1-202ENST00000273342 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
COL8A1-202ENST00000273342 APLP2Q06481 763 aa19.04■□□□□ 0.64
COL8A1-202ENST00000273342 NACADO15069 1562 aa19.04■□□□□ 0.64
COL8A1-202ENST00000273342 GOLGA3Q08378 1498 aa18.94■□□□□ 0.62
COL8A1-202ENST00000273342 TOP2AP11388 1531 aaKnown RBP18.91■□□□□ 0.62
COL8A1-202ENST00000273342 SUPT16HQ9Y5B9 1047 aaKnown RBP18.91■□□□□ 0.62
COL8A1-202ENST00000273342 SMARCA2P51531 1590 aa18.9■□□□□ 0.62
COL8A1-202ENST00000273342 CLIP1P30622 1438 aa18.89■□□□□ 0.62
COL8A1-202ENST00000273342 ITGAEP38570 1179 aa18.84■□□□□ 0.61
COL8A1-202ENST00000273342 EEA1Q15075 1411 aa18.84■□□□□ 0.61
COL8A1-202ENST00000273342 BCANQ96GW7 911 aa18.84■□□□□ 0.61
COL8A1-202ENST00000273342 KCNH8Q96L42 1107 aa18.8■□□□□ 0.6
COL8A1-202ENST00000273342 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
COL8A1-202ENST00000273342 VPS8Q8N3P4 1428 aa18.75■□□□□ 0.59
COL8A1-202ENST00000273342 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
COL8A1-202ENST00000273342 TSHZ2Q9NRE2 1034 aa18.74■□□□□ 0.59
COL8A1-202ENST00000273342 KANK4Q5T7N3 995 aaPredicted RBP18.73■□□□□ 0.59
COL8A1-202ENST00000273342 RAPGEF2Q9Y4G8 1499 aa18.72■□□□□ 0.59
COL8A1-202ENST00000273342 DHX57Q6P158 1386 aaKnown RBP18.71■□□□□ 0.58
COL8A1-202ENST00000273342 SYNJ1O43426 1573 aa18.65■□□□□ 0.58
COL8A1-202ENST00000273342 KIF21BO75037 1637 aa18.59■□□□□ 0.57
COL8A1-202ENST00000273342 FKBP8Q14318 412 aa18.59■□□□□ 0.57
COL8A1-202ENST00000273342 HIRIP3Q9BW71 556 aaPredicted RBP18.59■□□□□ 0.57
COL8A1-202ENST00000273342 ANP32EQ9BTT0 268 aa18.58■□□□□ 0.57
COL8A1-202ENST00000273342 DDX10Q13206 875 aaKnown RBP18.57■□□□□ 0.56
COL8A1-202ENST00000273342 CLSPNQ9HAW4 1339 aa18.52■□□□□ 0.56
COL8A1-202ENST00000273342 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
COL8A1-202ENST00000273342 SIN3AQ96ST3 1273 aa18.48■□□□□ 0.55
COL8A1-202ENST00000273342 UNC13AQ9UPW8 1703 aa18.46■□□□□ 0.54
COL8A1-202ENST00000273342 BAZ1BQ9UIG0 1483 aaKnown RBP18.45■□□□□ 0.54
COL8A1-202ENST00000273342 ATP1B4Q9UN42 357 aaPredicted RBP18.44■□□□□ 0.54
COL8A1-202ENST00000273342 ARAP1Q96P48 1450 aa18.41■□□□□ 0.54
COL8A1-202ENST00000273342 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
COL8A1-202ENST00000273342 CCNB3Q8WWL7 1395 aa18.39■□□□□ 0.53
COL8A1-202ENST00000273342 FAM50AQ14320 339 aaKnown RBP18.39■□□□□ 0.53
COL8A1-202ENST00000273342 NEFLP07196 543 aa18.38■□□□□ 0.53
COL8A1-202ENST00000273342 RAB3GAP2Q9H2M9 1393 aa18.38■□□□□ 0.53
COL8A1-202ENST00000273342 RBM19Q9Y4C8 960 aaKnown RBP18.36■□□□□ 0.53
COL8A1-202ENST00000273342 BICRAQ9NZM4 1560 aa18.32■□□□□ 0.52
COL8A1-202ENST00000273342 P3H3Q8IVL6 736 aa18.32■□□□□ 0.52
COL8A1-202ENST00000273342 IRX6P78412 446 aaPredicted RBP18.31■□□□□ 0.52
COL8A1-202ENST00000273342 RRBP1Q9P2E9 1410 aaKnown RBP18.31■□□□□ 0.52
COL8A1-202ENST00000273342 ATAD2BQ9ULI0 1458 aa18.3■□□□□ 0.52
COL8A1-202ENST00000273342 PRXQ9BXM0 1461 aa18.26■□□□□ 0.51
COL8A1-202ENST00000273342 ANP32CO43423 234 aa18.25■□□□□ 0.51
COL8A1-202ENST00000273342 WDR97A6NE52 1622 aa18.24■□□□□ 0.51
COL8A1-202ENST00000273342 PPP1R15AO75807 674 aaPredicted RBP18.22■□□□□ 0.51
COL8A1-202ENST00000273342 MAPKBP1O60336 1514 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms