RNA–Protein interactions for RNA: ENST00000407637.5

HERC3-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 1 (best) BASIC

Gene HERC3, Length 2,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-203ENST00000407637 NISCHQ9Y2I1 1504 aa23.12■■□□□ 1.29
HERC3-203ENST00000407637 HRCP23327 699 aa21.88■■□□□ 1.09
HERC3-203ENST00000407637 PELP1Q8IZL8 1130 aaKnown RBP21.62■■□□□ 1.05
HERC3-203ENST00000407637 PPARGC1BQ86YN6 1023 aaKnown RBP21.46■■□□□ 1.03
HERC3-203ENST00000407637 PCGF6Q9BYE7 350 aa21.24■□□□□ 0.99
HERC3-203ENST00000407637 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
HERC3-203ENST00000407637 SCAF1Q9H7N4 1312 aaKnown RBP20.95■□□□□ 0.94
HERC3-203ENST00000407637 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
HERC3-203ENST00000407637 MYT1Q01538 1121 aa20.87■□□□□ 0.93
HERC3-203ENST00000407637 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
HERC3-203ENST00000407637 CHIC1Q5VXU3 224 aa20.67■□□□□ 0.9
HERC3-203ENST00000407637 DCAF1Q9Y4B6 1507 aa20.6■□□□□ 0.89
HERC3-203ENST00000407637 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
HERC3-203ENST00000407637 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
HERC3-203ENST00000407637 ZEB1P37275 1124 aaPredicted RBP20.35■□□□□ 0.85
HERC3-203ENST00000407637 ACIN1Q9UKV3 1341 aaKnown RBP20.28■□□□□ 0.84
HERC3-203ENST00000407637 LOC105371045A0A1W2PR82 267 aa20.25■□□□□ 0.83
HERC3-203ENST00000407637 NEUROD1Q13562 356 aa20.23■□□□□ 0.83
HERC3-203ENST00000407637 GTF3C3Q9Y5Q9 886 aa20.14■□□□□ 0.82
HERC3-203ENST00000407637 CENPBP07199 599 aaPredicted RBP19.93■□□□□ 0.78
HERC3-203ENST00000407637 ZCCHC6Q5VYS8 1495 aaKnown RBP19.77■□□□□ 0.75
HERC3-203ENST00000407637 DIEXFQ68CQ4 756 aaKnown RBP19.72■□□□□ 0.75
HERC3-203ENST00000407637 TTBK1Q5TCY1 1321 aaPredicted RBP19.68■□□□□ 0.74
HERC3-203ENST00000407637 BCL11AQ9H165 835 aa19.59■□□□□ 0.73
HERC3-203ENST00000407637 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.56■□□□□ 0.72
HERC3-203ENST00000407637 CCER1Q8TC90 406 aaPredicted RBP19.51■□□□□ 0.71
HERC3-203ENST00000407637 YTHDC1Q96MU7 727 aaKnown RBP19.49■□□□□ 0.71
HERC3-203ENST00000407637 FAM9AQ8IZU1 332 aaPredicted RBP19.46■□□□□ 0.71
HERC3-203ENST00000407637 TRIM41Q8WV44 630 aa19.38■□□□□ 0.69
HERC3-203ENST00000407637 ANP32EQ9BTT0 268 aa19.33■□□□□ 0.68
HERC3-203ENST00000407637 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
HERC3-203ENST00000407637 ZNF316A6NFI3 1004 aaPredicted RBP19.22■□□□□ 0.67
HERC3-203ENST00000407637 DCAF8L2P0C7V8 631 aa19.19■□□□□ 0.66
HERC3-203ENST00000407637 MIER1Q8N108 512 aa19.18■□□□□ 0.66
HERC3-203ENST00000407637 CSRNP3Q8WYN3 585 aa19.16■□□□□ 0.66
HERC3-203ENST00000407637 TSHZ2Q9NRE2 1034 aa19.11■□□□□ 0.65
HERC3-203ENST00000407637 PRKCSHP14314 528 aaPredicted RBP19.08■□□□□ 0.65
HERC3-203ENST00000407637 SUPT16HQ9Y5B9 1047 aaKnown RBP19.08■□□□□ 0.65
HERC3-203ENST00000407637 CLSPNQ9HAW4 1339 aa18.96■□□□□ 0.63
HERC3-203ENST00000407637 ABCC9O60706 1549 aa18.91■□□□□ 0.62
HERC3-203ENST00000407637 RB1CC1Q8TDY2 1594 aa18.87■□□□□ 0.61
HERC3-203ENST00000407637 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
HERC3-203ENST00000407637 WRNQ14191 1432 aaPredicted RBP eCLIP18.7■□□□□ 0.58
HERC3-203ENST00000407637 BCANQ96GW7 911 aa18.65■□□□□ 0.58
HERC3-203ENST00000407637 RBM19Q9Y4C8 960 aaKnown RBP18.6■□□□□ 0.57
HERC3-203ENST00000407637 ERICH6Q7L0X2 663 aa18.56■□□□□ 0.56
HERC3-203ENST00000407637 CEP162Q5TB80 1403 aa18.56■□□□□ 0.56
HERC3-203ENST00000407637 HNRNPUL2Q1KMD3 747 aaKnown RBP18.52■□□□□ 0.56
HERC3-203ENST00000407637 MSH5O43196 834 aa18.51■□□□□ 0.55
HERC3-203ENST00000407637 FKBP8Q14318 412 aa18.49■□□□□ 0.55
HERC3-203ENST00000407637 KCNH8Q96L42 1107 aa18.39■□□□□ 0.53
HERC3-203ENST00000407637 ITGAEP38570 1179 aa18.36■□□□□ 0.53
HERC3-203ENST00000407637 APLP2Q06481 763 aa18.36■□□□□ 0.53
HERC3-203ENST00000407637 ANO8Q9HCE9 1232 aaPredicted RBP18.34■□□□□ 0.53
HERC3-203ENST00000407637 SCRIBQ14160 1630 aa18.34■□□□□ 0.53
HERC3-203ENST00000407637 TNIKQ9UKE5 1360 aa18.33■□□□□ 0.53
HERC3-203ENST00000407637 NEFLP07196 543 aa18.29■□□□□ 0.52
HERC3-203ENST00000407637 DEKP35659 375 aaKnown RBP18.28■□□□□ 0.52
HERC3-203ENST00000407637 EIF4G1Q04637 1599 aaKnown RBP18.28■□□□□ 0.52
HERC3-203ENST00000407637 FANCIQ9NVI1 1328 aa18.26■□□□□ 0.51
HERC3-203ENST00000407637 ABCC8Q09428 1581 aa18.26■□□□□ 0.51
HERC3-203ENST00000407637 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
HERC3-203ENST00000407637 UBTFP17480 764 aaKnown RBP18.2■□□□□ 0.5
HERC3-203ENST00000407637 MYT1LQ9UL68 1186 aa18.2■□□□□ 0.5
HERC3-203ENST00000407637 DHX57Q6P158 1386 aaKnown RBP18.19■□□□□ 0.5
HERC3-203ENST00000407637 SOGA1O94964 1423 aa18.17■□□□□ 0.5
HERC3-203ENST00000407637 WIZO95785 1651 aa18.16■□□□□ 0.5
HERC3-203ENST00000407637 SALL2Q9Y467 1007 aaPredicted RBP18.14■□□□□ 0.49
HERC3-203ENST00000407637 MROH2BQ7Z745 1585 aa18.14■□□□□ 0.49
HERC3-203ENST00000407637 CECR2Q9BXF3 1484 aa18.12■□□□□ 0.49
HERC3-203ENST00000407637 GOLGA3Q08378 1498 aa18.08■□□□□ 0.48
HERC3-203ENST00000407637 TRIM52Q96A61 297 aa18.07■□□□□ 0.48
HERC3-203ENST00000407637 RUSC2Q8N2Y8 1516 aa18.07■□□□□ 0.48
HERC3-203ENST00000407637 CDK11AQ9UQ88 783 aaPredicted RBP18.06■□□□□ 0.48
HERC3-203ENST00000407637 CCDC136Q96JN2 1154 aa18.05■□□□□ 0.48
HERC3-203ENST00000407637 BAZ1AQ9NRL2 1556 aaPredicted RBP18.01■□□□□ 0.47
HERC3-203ENST00000407637 EEA1Q15075 1411 aa18■□□□□ 0.47
HERC3-203ENST00000407637 ERICH6BQ5W0A0 696 aa18■□□□□ 0.47
HERC3-203ENST00000407637 NBR1Q14596 966 aa18■□□□□ 0.47
HERC3-203ENST00000407637 CLIP1P30622 1438 aa17.98■□□□□ 0.47
HERC3-203ENST00000407637 VPS8Q8N3P4 1428 aa17.98■□□□□ 0.47
HERC3-203ENST00000407637 DDX10Q13206 875 aaKnown RBP17.98■□□□□ 0.47
HERC3-203ENST00000407637 NACADO15069 1562 aa17.97■□□□□ 0.47
HERC3-203ENST00000407637 IRX6P78412 446 aaPredicted RBP17.95■□□□□ 0.46
HERC3-203ENST00000407637 IL27Q8NEV9 243 aa17.9■□□□□ 0.46
HERC3-203ENST00000407637 UBE2Q2Q8WVN8 375 aa17.9■□□□□ 0.46
HERC3-203ENST00000407637 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.9■□□□□ 0.46
HERC3-203ENST00000407637 NOP58Q9Y2X3 529 aaKnown RBP17.89■□□□□ 0.46
HERC3-203ENST00000407637 RTN4Q9NQC3 1192 aaKnown RBP17.87■□□□□ 0.45
HERC3-203ENST00000407637 PAK3O75914 559 aaPredicted RBP17.86■□□□□ 0.45
HERC3-203ENST00000407637 CCER2I3L3R5 266 aa17.85■□□□□ 0.45
HERC3-203ENST00000407637 PPP1R15AO75807 674 aaPredicted RBP17.84■□□□□ 0.45
HERC3-203ENST00000407637 CEP164Q9UPV0 1460 aa17.84■□□□□ 0.45
HERC3-203ENST00000407637 KIF21BO75037 1637 aa17.82■□□□□ 0.44
HERC3-203ENST00000407637 WDR97A6NE52 1622 aa17.8■□□□□ 0.44
HERC3-203ENST00000407637 ANP32CO43423 234 aa17.8■□□□□ 0.44
HERC3-203ENST00000407637 RANGAP1P46060 587 aaPredicted RBP17.78■□□□□ 0.44
HERC3-203ENST00000407637 MAPKBP1O60336 1514 aa17.77■□□□□ 0.44
HERC3-203ENST00000407637 RTL5Q5HYW3 569 aaPredicted RBP17.77■□□□□ 0.43
HERC3-203ENST00000407637 CUX2O14529 1486 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms