RNA–Protein interactions for RNA: ENST00000388996.9

KCNQ3-201, Transcript of potassium voltage-gated channel subfamily Q member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene KCNQ3, Length 11,510 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNQ3-201ENST00000388996 DCAF8L2P0C7V8 631 aa21.17■□□□□ 0.98
KCNQ3-201ENST00000388996 NISCHQ9Y2I1 1504 aa20.32■□□□□ 0.84
KCNQ3-201ENST00000388996 SUPT5HO00267 1087 aaKnown RBP20.03■□□□□ 0.8
KCNQ3-201ENST00000388996 SHROOM4Q9ULL8 1493 aa19.81■□□□□ 0.76
KCNQ3-201ENST00000388996 PELP1Q8IZL8 1130 aaKnown RBP19.49■□□□□ 0.71
KCNQ3-201ENST00000388996 EHMT2Q96KQ7 1210 aa19.49■□□□□ 0.71
KCNQ3-201ENST00000388996 APLP2Q06481 763 aa19.38■□□□□ 0.69
KCNQ3-201ENST00000388996 FAM9AQ8IZU1 332 aaPredicted RBP19.16■□□□□ 0.66
KCNQ3-201ENST00000388996 TTBK1Q5TCY1 1321 aaPredicted RBP18.92■□□□□ 0.62
KCNQ3-201ENST00000388996 PCGF6Q9BYE7 350 aa18.74■□□□□ 0.59
KCNQ3-201ENST00000388996 RANGAP1P46060 587 aaPredicted RBP18.72■□□□□ 0.59
KCNQ3-201ENST00000388996 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
KCNQ3-201ENST00000388996 CENPBP07199 599 aaPredicted RBP18.6■□□□□ 0.57
KCNQ3-201ENST00000388996 ZEB1P37275 1124 aaPredicted RBP18.59■□□□□ 0.57
KCNQ3-201ENST00000388996 ATP1B4Q9UN42 357 aaPredicted RBP18.57■□□□□ 0.56
KCNQ3-201ENST00000388996 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
KCNQ3-201ENST00000388996 ERICH6Q7L0X2 663 aa18.53■□□□□ 0.56
KCNQ3-201ENST00000388996 UBTFP17480 764 aaKnown RBP18.52■□□□□ 0.56
KCNQ3-201ENST00000388996 NEFLP07196 543 aa18.37■□□□□ 0.53
KCNQ3-201ENST00000388996 YTHDC1Q96MU7 727 aaKnown RBP18.17■□□□□ 0.5
KCNQ3-201ENST00000388996 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
KCNQ3-201ENST00000388996 MYT1LQ9UL68 1186 aa17.98■□□□□ 0.47
KCNQ3-201ENST00000388996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.96■□□□□ 0.47
KCNQ3-201ENST00000388996 HNRNPUL2Q1KMD3 747 aaKnown RBP17.96■□□□□ 0.47
KCNQ3-201ENST00000388996 TRIM26Q12899 539 aaPredicted RBP17.92■□□□□ 0.46
KCNQ3-201ENST00000388996 DAXXQ9UER7 740 aaPredicted RBP17.91■□□□□ 0.46
KCNQ3-201ENST00000388996 ITGAEP38570 1179 aa17.89■□□□□ 0.45
KCNQ3-201ENST00000388996 POLR3GLQ9BT43 218 aa17.88■□□□□ 0.45
KCNQ3-201ENST00000388996 MYT1Q01538 1121 aa17.87■□□□□ 0.45
KCNQ3-201ENST00000388996 CHIC1Q5VXU3 224 aa17.69■□□□□ 0.42
KCNQ3-201ENST00000388996 HRCP23327 699 aa17.67■□□□□ 0.42
KCNQ3-201ENST00000388996 SLC4A1APQ9BWU0 796 aaKnown RBP17.63■□□□□ 0.41
KCNQ3-201ENST00000388996 CNGB1Q14028 1251 aaPredicted RBP17.59■□□□□ 0.41
KCNQ3-201ENST00000388996 ABCC9O60706 1549 aa17.57■□□□□ 0.4
KCNQ3-201ENST00000388996 LOC105371045A0A1W2PR82 267 aa17.56■□□□□ 0.4
KCNQ3-201ENST00000388996 ZNF316A6NFI3 1004 aaPredicted RBP17.5■□□□□ 0.39
KCNQ3-201ENST00000388996 FAM50AQ14320 339 aaKnown RBP17.49■□□□□ 0.39
KCNQ3-201ENST00000388996 CLSPNQ9HAW4 1339 aa17.45■□□□□ 0.38
KCNQ3-201ENST00000388996 RTL5Q5HYW3 569 aaPredicted RBP17.4■□□□□ 0.38
KCNQ3-201ENST00000388996 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
KCNQ3-201ENST00000388996 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
KCNQ3-201ENST00000388996 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
KCNQ3-201ENST00000388996 SCRIBQ14160 1630 aa17.29■□□□□ 0.36
KCNQ3-201ENST00000388996 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
KCNQ3-201ENST00000388996 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
KCNQ3-201ENST00000388996 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
KCNQ3-201ENST00000388996 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
KCNQ3-201ENST00000388996 FBLN2P98095 1184 aa17.19■□□□□ 0.34
KCNQ3-201ENST00000388996 ANP32CO43423 234 aa17.17■□□□□ 0.34
KCNQ3-201ENST00000388996 CANXP27824 592 aaKnown RBP17.14■□□□□ 0.33
KCNQ3-201ENST00000388996 BCANQ96GW7 911 aa17.05■□□□□ 0.32
KCNQ3-201ENST00000388996 NEFMP07197 916 aa17.04■□□□□ 0.32
KCNQ3-201ENST00000388996 SLC24A1O60721 1099 aa17.03■□□□□ 0.32
KCNQ3-201ENST00000388996 ARID3CA6NKF2 412 aa17■□□□□ 0.31
KCNQ3-201ENST00000388996 CDK11AQ9UQ88 783 aaPredicted RBP16.99■□□□□ 0.31
KCNQ3-201ENST00000388996 BCL11AQ9H165 835 aa16.95■□□□□ 0.3
KCNQ3-201ENST00000388996 P3H3Q8IVL6 736 aa16.91■□□□□ 0.3
KCNQ3-201ENST00000388996 ZNF777Q9ULD5 760 aaPredicted RBP16.9■□□□□ 0.3
KCNQ3-201ENST00000388996 ESF1Q9H501 851 aaKnown RBP16.89■□□□□ 0.29
KCNQ3-201ENST00000388996 GTF3C3Q9Y5Q9 886 aa16.87■□□□□ 0.29
KCNQ3-201ENST00000388996 TONSLQ96HA7 1378 aa16.83■□□□□ 0.28
KCNQ3-201ENST00000388996 ANP32AP39687 249 aaKnown RBP16.82■□□□□ 0.28
KCNQ3-201ENST00000388996 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
KCNQ3-201ENST00000388996 ZCCHC6Q5VYS8 1495 aaKnown RBP16.8■□□□□ 0.28
KCNQ3-201ENST00000388996 STAG3Q9UJ98 1225 aa16.76■□□□□ 0.27
KCNQ3-201ENST00000388996 RB1CC1Q8TDY2 1594 aa16.74■□□□□ 0.27
KCNQ3-201ENST00000388996 DCAF1Q9Y4B6 1507 aa16.71■□□□□ 0.27
KCNQ3-201ENST00000388996 HSP90AA1P07900 732 aaKnown RBP16.69■□□□□ 0.26
KCNQ3-201ENST00000388996 NPM2Q86SE8 214 aaKnown RBP16.67■□□□□ 0.26
KCNQ3-201ENST00000388996 CHGAP10645 457 aaKnown RBP16.66■□□□□ 0.26
KCNQ3-201ENST00000388996 NPM1P06748 294 aaKnown RBP eCLIP16.64■□□□□ 0.25
KCNQ3-201ENST00000388996 ANP32BQ92688 251 aaKnown RBP16.64■□□□□ 0.25
KCNQ3-201ENST00000388996 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
KCNQ3-201ENST00000388996 UPF2Q9HAU5 1272 aaKnown RBP16.62■□□□□ 0.25
KCNQ3-201ENST00000388996 ACIN1Q9UKV3 1341 aaKnown RBP16.62■□□□□ 0.25
KCNQ3-201ENST00000388996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.24
KCNQ3-201ENST00000388996 MTUS2Q5JR59 1369 aa16.55■□□□□ 0.24
KCNQ3-201ENST00000388996 CLIP1P30622 1438 aa16.54■□□□□ 0.24
KCNQ3-201ENST00000388996 HNRNPUQ00839 825 aaKnown RBP eCLIP16.54■□□□□ 0.24
KCNQ3-201ENST00000388996 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.51■□□□□ 0.23
KCNQ3-201ENST00000388996 FAM9BQ8IZU0 186 aa16.49■□□□□ 0.23
KCNQ3-201ENST00000388996 CHIC2Q9UKJ5 165 aa16.49■□□□□ 0.23
KCNQ3-201ENST00000388996 NACADO15069 1562 aa16.48■□□□□ 0.23
KCNQ3-201ENST00000388996 FKBP8Q14318 412 aa16.47■□□□□ 0.23
KCNQ3-201ENST00000388996 WDR43Q15061 677 aaKnown RBP eCLIP16.46■□□□□ 0.23
KCNQ3-201ENST00000388996 MYH16Q9H6N6 1097 aa16.45■□□□□ 0.22
KCNQ3-201ENST00000388996 DDX10Q13206 875 aaKnown RBP16.45■□□□□ 0.22
KCNQ3-201ENST00000388996 TMC1Q8TDI8 760 aa16.45■□□□□ 0.22
KCNQ3-201ENST00000388996 CHMP7Q8WUX9 453 aaPredicted RBP16.44■□□□□ 0.22
KCNQ3-201ENST00000388996 TSPY4P0CV99 314 aa16.43■□□□□ 0.22
KCNQ3-201ENST00000388996 TSPY10P0CW01 314 aa16.43■□□□□ 0.22
KCNQ3-201ENST00000388996 CCDC136Q96JN2 1154 aa16.42■□□□□ 0.22
KCNQ3-201ENST00000388996 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
KCNQ3-201ENST00000388996 RSF1Q96T23 1441 aaPredicted RBP16.41■□□□□ 0.22
KCNQ3-201ENST00000388996 GOLGA3Q08378 1498 aa16.4■□□□□ 0.22
KCNQ3-201ENST00000388996 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
KCNQ3-201ENST00000388996 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
KCNQ3-201ENST00000388996 MRS2Q9HD23 443 aa16.39■□□□□ 0.21
KCNQ3-201ENST00000388996 PPP1R15AO75807 674 aaPredicted RBP16.38■□□□□ 0.21
KCNQ3-201ENST00000388996 EEA1Q15075 1411 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms