Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC12.34□□□□□ -0.43
RFC3P40938 DDX39AP1-201ENST00000445147 1181 ntBASIC12.34□□□□□ -0.43
RFC3P40938 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
RFC3P40938 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC12.34□□□□□ -0.43
RFC3P40938 VDAC1P11-201ENST00000458323 852 ntBASIC12.34□□□□□ -0.43
RFC3P40938 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC12.34□□□□□ -0.43
RFC3P40938 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC12.34□□□□□ -0.43
RFC3P40938 AC068831.5-201ENST00000557387 328 ntBASIC12.34□□□□□ -0.43
RFC3P40938 AL118516.1-201ENST00000564152 670 ntBASIC12.34□□□□□ -0.43
RFC3P40938 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC12.34□□□□□ -0.43
RFC3P40938 GGNBP1-204ENST00000613113 887 ntBASIC12.34□□□□□ -0.43
RFC3P40938 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 BX324167.2-201ENST00000623717 3316 ntBASIC12.34□□□□□ -0.43
RFC3P40938 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RFC3P40938 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
RFC3P40938 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.33□□□□□ -0.43
RFC3P40938 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC12.33□□□□□ -0.43
RFC3P40938 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC12.33□□□□□ -0.43
RFC3P40938 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
RFC3P40938 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 PCDHB18P-202ENST00000526308 3197 ntBASIC12.33□□□□□ -0.44
RFC3P40938 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 OR10N1P-201ENST00000392758 869 ntBASIC12.33□□□□□ -0.44
RFC3P40938 SNORA50C-201ENST00000408535 133 ntBASIC12.33□□□□□ -0.44
RFC3P40938 IFNWP2-201ENST00000431203 580 ntBASIC12.33□□□□□ -0.44
RFC3P40938 NRADDP-201ENST00000437305 691 ntBASIC12.33□□□□□ -0.44
RFC3P40938 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC12.33□□□□□ -0.44
RFC3P40938 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.33□□□□□ -0.44
RFC3P40938 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC12.33□□□□□ -0.44
RFC3P40938 ALG1L7P-201ENST00000502317 768 ntBASIC12.33□□□□□ -0.44
RFC3P40938 GDNF-207ENST00000515058 764 ntTSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC12.33□□□□□ -0.44
RFC3P40938 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 KRT18P8-201ENST00000581937 1246 ntBASIC12.33□□□□□ -0.44
RFC3P40938 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 AC137723.2-201ENST00000623540 398 ntBASIC12.33□□□□□ -0.44
RFC3P40938 SNORA50.1-201ENST00000628590 135 ntBASIC12.33□□□□□ -0.44
RFC3P40938 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
RFC3P40938 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
RFC3P40938 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RFC3P40938 AGAP12P-201ENST00000585227 2359 ntBASIC12.33□□□□□ -0.44
RFC3P40938 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
RFC3P40938 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms