Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.11■□□□□ 0.81
SHANK1Q9Y566 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 AL499627.2-201ENST00000606283 725 ntBASIC20.11■□□□□ 0.81
SHANK1Q9Y566 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.11■□□□□ 0.81
SHANK1Q9Y566 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK1Q9Y566 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SHANK1Q9Y566 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHANK1Q9Y566 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 ALDH1A3-203ENST00000557963 1670 ntBASIC20.08■□□□□ 0.81
SHANK1Q9Y566 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 MIR663A-201ENST00000385250 93 ntBASIC20.08■□□□□ 0.81
SHANK1Q9Y566 CROCCP5-201ENST00000436658 830 ntBASIC20.08■□□□□ 0.81
SHANK1Q9Y566 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
SHANK1Q9Y566 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 AL355802.2-201ENST00000402069 882 ntBASIC20.08■□□□□ 0.8
SHANK1Q9Y566 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHANK1Q9Y566 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 AL161729.1-201ENST00000604104 1402 ntBASIC20.07■□□□□ 0.8
SHANK1Q9Y566 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.07■□□□□ 0.8
SHANK1Q9Y566 AC066615.1-201ENST00000640911 628 ntBASIC20.07■□□□□ 0.8
SHANK1Q9Y566 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.06■□□□□ 0.8
SHANK1Q9Y566 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms