Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.76■□□□□ 0.43
CX3CL1P78423 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CX3CL1P78423 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CX3CL1P78423 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.76■□□□□ 0.43
CX3CL1P78423 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CX3CL1P78423 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CX3CL1P78423 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CX3CL1P78423 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CX3CL1P78423 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.75■□□□□ 0.43
CX3CL1P78423 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.75■□□□□ 0.43
CX3CL1P78423 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CX3CL1P78423 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.75■□□□□ 0.43
CX3CL1P78423 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.75■□□□□ 0.43
CX3CL1P78423 DUSP8P3-201ENST00000399571 1760 ntBASIC17.75■□□□□ 0.43
CX3CL1P78423 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CX3CL1P78423 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CX3CL1P78423 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CX3CL1P78423 AL353803.4-201ENST00000565882 1934 ntBASIC17.74■□□□□ 0.43
CX3CL1P78423 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.74■□□□□ 0.43
CX3CL1P78423 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 C17orf82-201ENST00000623772 1530 ntBASIC17.74■□□□□ 0.43
CX3CL1P78423 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.74■□□□□ 0.43
CX3CL1P78423 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 LINC00565-201ENST00000562710 2331 ntBASIC17.74■□□□□ 0.43
CX3CL1P78423 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.74■□□□□ 0.43
CX3CL1P78423 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CL1P78423 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CL1P78423 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CL1P78423 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 FP325331.1-202ENST00000623531 1380 ntBASIC17.74■□□□□ 0.43
CX3CL1P78423 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CL1P78423 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CL1P78423 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CX3CL1P78423 LINC01529-204ENST00000636474 1715 ntBASIC17.73■□□□□ 0.43
CX3CL1P78423 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CX3CL1P78423 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CX3CL1P78423 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CL1P78423 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.73■□□□□ 0.43
CX3CL1P78423 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.73■□□□□ 0.43
CX3CL1P78423 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CL1P78423 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CL1P78423 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.73■□□□□ 0.43
CX3CL1P78423 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CL1P78423 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CX3CL1P78423 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CL1P78423 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CL1P78423 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CL1P78423 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CL1P78423 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CL1P78423 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CL1P78423 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CL1P78423 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CL1P78423 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.72■□□□□ 0.43
CX3CL1P78423 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CX3CL1P78423 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC17.72■□□□□ 0.43
CX3CL1P78423 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CL1P78423 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.72■□□□□ 0.43
CX3CL1P78423 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CL1P78423 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CX3CL1P78423 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.72■□□□□ 0.43
CX3CL1P78423 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CL1P78423 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.71■□□□□ 0.43
CX3CL1P78423 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CL1P78423 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.71■□□□□ 0.43
CX3CL1P78423 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CL1P78423 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.71■□□□□ 0.43
CX3CL1P78423 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CL1P78423 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.71■□□□□ 0.43
CX3CL1P78423 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CL1P78423 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CX3CL1P78423 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CL1P78423 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.71■□□□□ 0.43
CX3CL1P78423 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CL1P78423 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CX3CL1P78423 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.71■□□□□ 0.42
CX3CL1P78423 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CL1P78423 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CX3CL1P78423 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CX3CL1P78423 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CX3CL1P78423 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CL1P78423 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CL1P78423 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms