Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 IGHV3-19-201ENST00000521488 291 ntBASIC21.04■□□□□ 0.96
RORAP35398 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.04■□□□□ 0.96
RORAP35398 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.04■□□□□ 0.96
RORAP35398 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RORAP35398 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RORAP35398 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RORAP35398 AC010525.1-201ENST00000585559 441 ntBASIC21.03■□□□□ 0.96
RORAP35398 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RORAP35398 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RORAP35398 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RORAP35398 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RORAP35398 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RORAP35398 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.02■□□□□ 0.96
RORAP35398 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.02■□□□□ 0.96
RORAP35398 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.02■□□□□ 0.96
RORAP35398 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.02■□□□□ 0.96
RORAP35398 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.02■□□□□ 0.96
RORAP35398 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RORAP35398 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RORAP35398 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
RORAP35398 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RORAP35398 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.01■□□□□ 0.95
RORAP35398 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.01■□□□□ 0.95
RORAP35398 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.01■□□□□ 0.95
RORAP35398 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
RORAP35398 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.01■□□□□ 0.95
RORAP35398 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.01■□□□□ 0.95
RORAP35398 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RORAP35398 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
RORAP35398 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RORAP35398 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
RORAP35398 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RORAP35398 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RORAP35398 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21■□□□□ 0.95
RORAP35398 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21■□□□□ 0.95
RORAP35398 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RORAP35398 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21■□□□□ 0.95
RORAP35398 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RORAP35398 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RORAP35398 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.99■□□□□ 0.95
RORAP35398 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RORAP35398 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 AC092666.2-201ENST00000613287 246 ntBASIC20.99■□□□□ 0.95
RORAP35398 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
RORAP35398 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.99■□□□□ 0.95
RORAP35398 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.98■□□□□ 0.95
RORAP35398 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.98■□□□□ 0.95
RORAP35398 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
RORAP35398 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 MIR572-201ENST00000384983 95 ntBASIC20.98■□□□□ 0.95
RORAP35398 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.98■□□□□ 0.95
RORAP35398 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.98■□□□□ 0.95
RORAP35398 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 AC104564.3-201ENST00000582367 638 ntBASIC20.98■□□□□ 0.95
RORAP35398 AC079630.1-202ENST00000618127 1840 ntBASIC20.98■□□□□ 0.95
RORAP35398 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.98■□□□□ 0.95
RORAP35398 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.98■□□□□ 0.95
RORAP35398 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
RORAP35398 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RORAP35398 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RORAP35398 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.97■□□□□ 0.95
RORAP35398 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RORAP35398 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RORAP35398 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RORAP35398 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.97■□□□□ 0.95
RORAP35398 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.97■□□□□ 0.95
RORAP35398 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RORAP35398 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RORAP35398 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RORAP35398 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RORAP35398 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.96■□□□□ 0.95
RORAP35398 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.96■□□□□ 0.95
RORAP35398 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RORAP35398 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms