Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 HLA-V-202ENST00000446817 847 ntBASIC16.62■□□□□ 0.25
HLA-DQA1P01909 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQA1P01909 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 RNF165-205ENST00000588679 2904 ntBASIC16.61■□□□□ 0.25
HLA-DQA1P01909 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 CD37-213ENST00000598095 1598 ntTSL 2 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DQA1P01909 FAM99A-202ENST00000538190 1989 ntBASIC16.6■□□□□ 0.25
HLA-DQA1P01909 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 CHST11-203ENST00000547956 936 ntTSL 2 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DQA1P01909 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
HLA-DQA1P01909 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.58■□□□□ 0.25
HLA-DQA1P01909 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DQA1P01909 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
HLA-DQA1P01909 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DQA1P01909 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 AC005229.4-201ENST00000610085 2198 ntBASIC16.58■□□□□ 0.24
HLA-DQA1P01909 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DQA1P01909 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 LINC01521-201ENST00000504184 1943 ntBASIC16.57■□□□□ 0.24
HLA-DQA1P01909 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 AC079630.1-202ENST00000618127 1840 ntBASIC16.57■□□□□ 0.24
HLA-DQA1P01909 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 AC126177.7-201ENST00000547904 679 ntBASIC16.57■□□□□ 0.24
HLA-DQA1P01909 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms