Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV41A0A0B4J266 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV41A0A0B4J266 PBX2P1-201ENST00000493219 1291 ntBASIC17.43■□□□□ 0.38
TRAV41A0A0B4J266 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV41A0A0B4J266 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV41A0A0B4J266 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 AC024257.2-201ENST00000549699 147 ntBASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 AL139246.5-201ENST00000606645 996 ntBASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 AC110285.6-201ENST00000617652 491 ntBASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV41A0A0B4J266 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 AC136469.2-201ENST00000623944 1028 ntBASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV41A0A0B4J266 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 AC004687.1-201ENST00000579003 1625 ntBASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 AC106739.1-201ENST00000617035 715 ntBASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV41A0A0B4J266 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV41A0A0B4J266 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 MIR4767-201ENST00000582827 78 ntBASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV41A0A0B4J266 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV41A0A0B4J266 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms