Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 RN7SL277P-201ENST00000481521 288 ntBASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 MIR4687-201ENST00000583618 80 ntBASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 ARHGEF9-235ENST00000637723 2146 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 NOS3-203ENST00000461406 3644 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 SPRED2-201ENST00000356388 4097 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 AR-208ENST00000612452 10676 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 LINC01624-203ENST00000607074 3265 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 KCTD10-201ENST00000228495 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 TXLNG-202ENST00000398155 3998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC112Q8NEF3 GALT-201ENST00000378842 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AFG3L2P1-201ENST00000521792 1763 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 FSCN3-201ENST00000265825 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AL135960.1-201ENST00000422216 4036 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 RUBCN-202ENST00000296343 2919 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 NAB1-203ENST00000409641 2472 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AMACR-201ENST00000335606 4153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 GLYR1-212ENST00000591451 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 STXBP1-221ENST00000637953 3925 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC006987.1-201ENST00000413610 527 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC099336.1-201ENST00000417053 1171 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC005722.1-201ENST00000431878 964 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 PFN1P12-201ENST00000455938 534 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 SRP19-206ENST00000515463 660 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC005740.1-201ENST00000515639 522 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 SCARNA21-201ENST00000517026 139 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AL583810.1-201ENST00000553344 1045 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC244157.2-201ENST00000616239 1006 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 RHOXF1P1-202ENST00000635473 501 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AP1M1-203ENST00000444449 2311 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 TUFT1-202ENST00000368848 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 CICP18-201ENST00000406017 2812 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 SMCR5-201ENST00000543475 2844 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 C10orf105-201ENST00000398786 4730 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC099521.2-201ENST00000619354 2036 ntBASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 POFUT2-203ENST00000349485 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 AC022098.1-201ENST00000588387 2861 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 ACADL-201ENST00000233710 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 MIGA2-201ENST00000358369 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 HJURP-204ENST00000432087 3027 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCDC112Q8NEF3 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 AL031587.5-201ENST00000624344 1849 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 NTM-206ENST00000427481 2583 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 MTERF2-207ENST00000552029 3235 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 RIOK3-201ENST00000339486 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 CDKN2B-201ENST00000276925 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms