Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL28A1Q2UY09 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SSR4-202ENST00000370085 526 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC103592.1-201ENST00000394513 664 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 MIR1226-201ENST00000408658 75 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 BX679664.3-201ENST00000414070 555 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 HMGA1P1-201ENST00000415560 1062 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 RPSAP12-201ENST00000435879 888 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC007881.1-201ENST00000437460 187 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 KRT18P15-201ENST00000458108 1291 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 RNU1-80P-201ENST00000459500 161 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC113935.1-201ENST00000471722 555 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 RNF7-205ENST00000480908 782 ntTSL 4 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC022001.3-201ENST00000606330 596 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 BAP1-211ENST00000615113 489 ntBASIC13.02□□□□□ -0.33
COL28A1Q2UY09 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL28A1Q2UY09 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 RN7SL523P-201ENST00000484401 298 ntBASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.01□□□□□ -0.33
COL28A1Q2UY09 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms