Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.64■■□□□ 1.69
PTPN22Q9Y2R2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PTPN22Q9Y2R2 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.64■■□□□ 1.69
PTPN22Q9Y2R2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN22Q9Y2R2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 AP004607.4-201ENST00000530158 1459 ntBASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC25.62■■□□□ 1.69
PTPN22Q9Y2R2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 MIR663A-201ENST00000385250 93 ntBASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 AC142086.2-201ENST00000569753 217 ntBASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.61■■□□□ 1.69
PTPN22Q9Y2R2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN22Q9Y2R2 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.59■■□□□ 1.69
PTPN22Q9Y2R2 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 AC004854.2-201ENST00000608450 1441 ntBASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 OR2I1P-207ENST00000453522 948 ntBASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN22Q9Y2R2 DUSP8P4-201ENST00000399538 1761 ntBASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 KRT18P6-201ENST00000555540 1265 ntBASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN22Q9Y2R2 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC25.56■■□□□ 1.68
PTPN22Q9Y2R2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 TPRG1LP1-201ENST00000598702 760 ntBASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 AC011767.1-201ENST00000617410 1153 ntBASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms