Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX56Q9NY93 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX56Q9NY93 AC127496.7-201ENST00000625110 1798 ntBASIC23.15■■□□□ 1.3
DDX56Q9NY93 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
DDX56Q9NY93 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX56Q9NY93 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX56Q9NY93 AC010997.5-201ENST00000609182 354 ntBASIC23.15■■□□□ 1.3
DDX56Q9NY93 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX56Q9NY93 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DDX56Q9NY93 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
DDX56Q9NY93 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX56Q9NY93 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.14■■□□□ 1.29
DDX56Q9NY93 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX56Q9NY93 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.14■■□□□ 1.29
DDX56Q9NY93 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
DDX56Q9NY93 DUX4L4-201ENST00000566884 1269 ntBASIC23.14■■□□□ 1.29
DDX56Q9NY93 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX56Q9NY93 AL451085.2-201ENST00000605085 799 ntBASIC23.14■■□□□ 1.29
DDX56Q9NY93 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX56Q9NY93 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.14■■□□□ 1.29
DDX56Q9NY93 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.14■■□□□ 1.29
DDX56Q9NY93 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
DDX56Q9NY93 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
DDX56Q9NY93 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.13■■□□□ 1.29
DDX56Q9NY93 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.13■■□□□ 1.29
DDX56Q9NY93 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.13■■□□□ 1.29
DDX56Q9NY93 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX56Q9NY93 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX56Q9NY93 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX56Q9NY93 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX56Q9NY93 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX56Q9NY93 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.12■■□□□ 1.29
DDX56Q9NY93 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
DDX56Q9NY93 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
DDX56Q9NY93 AC009102.2-201ENST00000606772 1639 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
DDX56Q9NY93 LINC00526-201ENST00000581067 1875 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.11■■□□□ 1.29
DDX56Q9NY93 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.11■■□□□ 1.29
DDX56Q9NY93 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
DDX56Q9NY93 AC242852.2-201ENST00000615738 1807 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 TSPY9P-201ENST00000440215 945 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 TSPY11P-201ENST00000442607 1045 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 AC009086.3-201ENST00000623486 1008 ntBASIC23.11■■□□□ 1.29
DDX56Q9NY93 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.11■■□□□ 1.29
DDX56Q9NY93 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX56Q9NY93 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX56Q9NY93 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX56Q9NY93 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
DDX56Q9NY93 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
DDX56Q9NY93 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX56Q9NY93 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX56Q9NY93 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.1■■□□□ 1.29
DDX56Q9NY93 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
DDX56Q9NY93 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX56Q9NY93 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 EP400NL-214ENST00000641289 2402 ntBASIC23.09■■□□□ 1.29
DDX56Q9NY93 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.09■■□□□ 1.29
DDX56Q9NY93 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.09■■□□□ 1.29
DDX56Q9NY93 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
DDX56Q9NY93 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
DDX56Q9NY93 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX56Q9NY93 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.08■■□□□ 1.29
DDX56Q9NY93 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.08■■□□□ 1.29
DDX56Q9NY93 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX56Q9NY93 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
DDX56Q9NY93 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX56Q9NY93 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.08■■□□□ 1.28
DDX56Q9NY93 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.07■■□□□ 1.28
DDX56Q9NY93 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
DDX56Q9NY93 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DDX56Q9NY93 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.07■■□□□ 1.28
DDX56Q9NY93 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
DDX56Q9NY93 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX56Q9NY93 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
DDX56Q9NY93 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX56Q9NY93 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX56Q9NY93 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.05■■□□□ 1.28
DDX56Q9NY93 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms