Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 DUX4L4-201ENST00000566884 1269 ntBASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.91■□□□□ 0.94
CCDC116Q8IYX3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC116Q8IYX3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.89■□□□□ 0.94
CCDC116Q8IYX3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC116Q8IYX3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC116Q8IYX3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC116Q8IYX3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.86■□□□□ 0.93
CCDC116Q8IYX3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC116Q8IYX3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 AC233723.2-201ENST00000623798 2106 ntBASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC116Q8IYX3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC116Q8IYX3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms