Protein–RNA interactions for Protein: O75382

TRIM3, Tripartite motif-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3O75382 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TRIM3O75382 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM3O75382 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM3O75382 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM3O75382 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM3O75382 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TRIM3O75382 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM3O75382 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM3O75382 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM3O75382 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM3O75382 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM3O75382 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM3O75382 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM3O75382 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TRIM3O75382 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM3O75382 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM3O75382 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM3O75382 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM3O75382 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM3O75382 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
TRIM3O75382 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM3O75382 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM3O75382 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
TRIM3O75382 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM3O75382 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM3O75382 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TRIM3O75382 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM3O75382 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM3O75382 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 UNC93B3-201ENST00000308076 687 ntBASIC20.56■□□□□ 0.88
TRIM3O75382 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM3O75382 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM3O75382 AC092171.4-201ENST00000609130 632 ntBASIC20.56■□□□□ 0.88
TRIM3O75382 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.56■□□□□ 0.88
TRIM3O75382 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM3O75382 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM3O75382 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TRIM3O75382 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM3O75382 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM3O75382 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM3O75382 MIR638-201ENST00000385237 100 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
TRIM3O75382 DUX4L19-201ENST00000557448 1267 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 AC099791.2-201ENST00000605725 427 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 AC241377.3-202ENST00000626088 1088 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 AC241585.3-202ENST00000628937 1088 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 AC245100.8-202ENST00000629247 1058 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 AL117328.2-201ENST00000624617 1940 ntBASIC20.55■□□□□ 0.88
TRIM3O75382 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM3O75382 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRIM3O75382 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM3O75382 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM3O75382 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM3O75382 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM3O75382 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM3O75382 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM3O75382 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM3O75382 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM3O75382 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM3O75382 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TRIM3O75382 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM3O75382 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM3O75382 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM3O75382 AC133561.4-201ENST00000566112 224 ntBASIC20.52■□□□□ 0.88
TRIM3O75382 AC106739.1-201ENST00000617035 715 ntBASIC20.52■□□□□ 0.88
TRIM3O75382 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM3O75382 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM3O75382 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM3O75382 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM3O75382 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM3O75382 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM3O75382 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms