Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC29.88■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC29.86■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC29.84■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 AC092068.2-201ENST00000590491 1708 ntBASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SENP3-EIF4A1A0A087X0R7 DUSP8P3-201ENST00000399571 1760 ntBASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 PBX2P1-201ENST00000493219 1291 ntBASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AL353803.4-201ENST00000565882 1934 ntBASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 MIR6722-201ENST00000617286 78 ntBASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AC106739.1-201ENST00000617035 715 ntBASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AL117332.1-201ENST00000622628 974 ntBASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC29.79■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms