Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CFAP65-204ENST00000410037 2703 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 TLE3-208ENST00000557907 2295 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CELF3-202ENST00000290585 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CYP11B1-204ENST00000517471 1874 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CTAGE13P-201ENST00000416709 2446 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 MIS12-202ENST00000573759 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AC087164.2-201ENST00000624514 3130 ntBASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AC106827.1-201ENST00000366454 431 ntBASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 RNMTL1P1-201ENST00000454103 560 ntBASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 BNIP3P13-201ENST00000599968 566 ntBASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 NTM-206ENST00000427481 2583 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.28□□□□□ -0.28
CCDC28BQ9BUN5 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 AC010997.4-201ENST00000609200 1890 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 FBXO44-202ENST00000251547 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 DRC7-203ENST00000394337 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 GOLGA8O-201ENST00000509311 1997 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 CCDC114-201ENST00000315396 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC28BQ9BUN5 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 FAM95C-205ENST00000637556 2421 ntAPPRIS P5 TSL 2 BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC28BQ9BUN5 HSPB1P2-201ENST00000448722 546 ntBASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms