Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AC010336.1-201ENST00000539278 4739 ntBASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 RPS9P1-201ENST00000419943 583 ntBASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AL022334.2-201ENST00000610000 484 ntBASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AL139424.3-202ENST00000641619 917 ntBASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC50Q8IVM0 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AC020763.3-201ENST00000625095 2904 ntBASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 USP47-202ENST00000339865 7775 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 RNA5SP359-201ENST00000364838 113 ntBASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AC013355.1-201ENST00000562625 723 ntBASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AL132994.2-201ENST00000603120 687 ntBASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 OS9-203ENST00000389142 2457 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC50Q8IVM0 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 AC102953.2-201ENST00000609755 3026 ntBASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 AC090114.2-201ENST00000608477 7054 ntBASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC50Q8IVM0 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms