Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 MIR6720-201ENST00000611664 98 ntBASIC12.32□□□□□ -0.44
LRRC28Q86X40 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.32□□□□□ -0.44
LRRC28Q86X40 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LRRC28Q86X40 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AC134407.3-201ENST00000624035 2139 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 ZNF493-208ENST00000599461 1769 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 HMGA1P1-201ENST00000415560 1062 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 NKAIN1P1-201ENST00000435754 582 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 BX284668.4-201ENST00000453917 508 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AC106794.1-201ENST00000506935 792 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 SCARNA20.5-201ENST00000516991 142 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 AC044849.1-201ENST00000519737 1188 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AL136295.7-201ENST00000619226 1200 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AL008718.2-201ENST00000609206 1313 ntBASIC12.31□□□□□ -0.44
LRRC28Q86X40 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.31□□□□□ -0.44
LRRC28Q86X40 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LRRC28Q86X40 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
LRRC28Q86X40 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LRRC28Q86X40 FNTAP2-201ENST00000430308 634 ntBASIC12.3□□□□□ -0.44
LRRC28Q86X40 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms