RNA–Protein interactions for RNA: ENST00000525074.5

TRIM3-203, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TRIM3, Length 3,044 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-203ENST00000525074 NISCHQ9Y2I1 1504 aa25.62■■□□□ 1.69
TRIM3-203ENST00000525074 SHROOM4Q9ULL8 1493 aa22.88■■□□□ 1.25
TRIM3-203ENST00000525074 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
TRIM3-203ENST00000525074 DCAF8L2P0C7V8 631 aa22.28■■□□□ 1.16
TRIM3-203ENST00000525074 HRCP23327 699 aa22.11■■□□□ 1.13
TRIM3-203ENST00000525074 PCGF6Q9BYE7 350 aa21.99■■□□□ 1.11
TRIM3-203ENST00000525074 PPARGC1BQ86YN6 1023 aaKnown RBP21.96■■□□□ 1.11
TRIM3-203ENST00000525074 MYO15BQ96JP2 1530 aa21.86■■□□□ 1.09
TRIM3-203ENST00000525074 CHIC1Q5VXU3 224 aa21.77■■□□□ 1.07
TRIM3-203ENST00000525074 ZCCHC6Q5VYS8 1495 aaKnown RBP21.62■■□□□ 1.05
TRIM3-203ENST00000525074 LOC105371045A0A1W2PR82 267 aa21.46■■□□□ 1.03
TRIM3-203ENST00000525074 CCDC180Q9P1Z9 1646 aa21.27■■□□□ 1
TRIM3-203ENST00000525074 EHMT2Q96KQ7 1210 aa21.13■□□□□ 0.97
TRIM3-203ENST00000525074 TRIM26Q12899 539 aaPredicted RBP21.09■□□□□ 0.97
TRIM3-203ENST00000525074 DCAF1Q9Y4B6 1507 aa21.08■□□□□ 0.97
TRIM3-203ENST00000525074 FAM9AQ8IZU1 332 aaPredicted RBP20.94■□□□□ 0.94
TRIM3-203ENST00000525074 SCAF1Q9H7N4 1312 aaKnown RBP20.92■□□□□ 0.94
TRIM3-203ENST00000525074 PELP1Q8IZL8 1130 aaKnown RBP20.8■□□□□ 0.92
TRIM3-203ENST00000525074 ZEB1P37275 1124 aaPredicted RBP20.72■□□□□ 0.91
TRIM3-203ENST00000525074 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
TRIM3-203ENST00000525074 TRIM41Q8WV44 630 aa20.64■□□□□ 0.9
TRIM3-203ENST00000525074 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.87
TRIM3-203ENST00000525074 ABCC9O60706 1549 aa20.5■□□□□ 0.87
TRIM3-203ENST00000525074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
TRIM3-203ENST00000525074 NEUROD1Q13562 356 aa20.45■□□□□ 0.86
TRIM3-203ENST00000525074 TTBK1Q5TCY1 1321 aaPredicted RBP20.39■□□□□ 0.85
TRIM3-203ENST00000525074 RB1CC1Q8TDY2 1594 aa20.38■□□□□ 0.85
TRIM3-203ENST00000525074 ACIN1Q9UKV3 1341 aaKnown RBP20.38■□□□□ 0.85
TRIM3-203ENST00000525074 CCER1Q8TC90 406 aaPredicted RBP20.35■□□□□ 0.85
TRIM3-203ENST00000525074 CECR2Q9BXF3 1484 aa20.34■□□□□ 0.85
TRIM3-203ENST00000525074 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.85
TRIM3-203ENST00000525074 DIEXFQ68CQ4 756 aaKnown RBP20.21■□□□□ 0.83
TRIM3-203ENST00000525074 MROH2BQ7Z745 1585 aa20.14■□□□□ 0.81
TRIM3-203ENST00000525074 CENPBP07199 599 aaPredicted RBP20.13■□□□□ 0.81
TRIM3-203ENST00000525074 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
TRIM3-203ENST00000525074 WIZO95785 1651 aa20.04■□□□□ 0.8
TRIM3-203ENST00000525074 PABPN1Q86U42 306 aaKnown RBP eCLIP19.93■□□□□ 0.78
TRIM3-203ENST00000525074 RANGAP1P46060 587 aaPredicted RBP19.84■□□□□ 0.77
TRIM3-203ENST00000525074 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
TRIM3-203ENST00000525074 MYT1Q01538 1121 aa19.82■□□□□ 0.76
TRIM3-203ENST00000525074 NACADO15069 1562 aa19.81■□□□□ 0.76
TRIM3-203ENST00000525074 ZNF316A6NFI3 1004 aaPredicted RBP19.79■□□□□ 0.76
TRIM3-203ENST00000525074 UBTFP17480 764 aaKnown RBP19.77■□□□□ 0.76
TRIM3-203ENST00000525074 MIER1Q8N108 512 aa19.76■□□□□ 0.75
TRIM3-203ENST00000525074 CCDC88BA6NC98 1476 aa19.75■□□□□ 0.75
TRIM3-203ENST00000525074 SOGA1O94964 1423 aa19.71■□□□□ 0.75
TRIM3-203ENST00000525074 HNRNPUL2Q1KMD3 747 aaKnown RBP19.69■□□□□ 0.74
TRIM3-203ENST00000525074 RUSC2Q8N2Y8 1516 aa19.65■□□□□ 0.74
TRIM3-203ENST00000525074 CEP162Q5TB80 1403 aa19.61■□□□□ 0.73
TRIM3-203ENST00000525074 BAZ1AQ9NRL2 1556 aaPredicted RBP19.6■□□□□ 0.73
TRIM3-203ENST00000525074 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
TRIM3-203ENST00000525074 WRNQ14191 1432 aaPredicted RBP eCLIP19.47■□□□□ 0.71
TRIM3-203ENST00000525074 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
TRIM3-203ENST00000525074 SMARCA4P51532 1647 aa19.45■□□□□ 0.7
TRIM3-203ENST00000525074 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
TRIM3-203ENST00000525074 TOP2AP11388 1531 aaKnown RBP19.44■□□□□ 0.7
TRIM3-203ENST00000525074 TNIKQ9UKE5 1360 aa19.39■□□□□ 0.69
TRIM3-203ENST00000525074 UNC13AQ9UPW8 1703 aa19.32■□□□□ 0.68
TRIM3-203ENST00000525074 SUPT16HQ9Y5B9 1047 aaKnown RBP19.31■□□□□ 0.68
TRIM3-203ENST00000525074 APLP2Q06481 763 aa19.25■□□□□ 0.67
TRIM3-203ENST00000525074 BCANQ96GW7 911 aa19.2■□□□□ 0.66
TRIM3-203ENST00000525074 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
TRIM3-203ENST00000525074 TSHZ2Q9NRE2 1034 aa19.17■□□□□ 0.66
TRIM3-203ENST00000525074 SYNJ1O43426 1573 aa19.16■□□□□ 0.66
TRIM3-203ENST00000525074 CLIP1P30622 1438 aa19.15■□□□□ 0.66
TRIM3-203ENST00000525074 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
TRIM3-203ENST00000525074 ITGAEP38570 1179 aa19.14■□□□□ 0.65
TRIM3-203ENST00000525074 KCNH8Q96L42 1107 aa19.14■□□□□ 0.65
TRIM3-203ENST00000525074 RAPGEF2Q9Y4G8 1499 aa19.12■□□□□ 0.65
TRIM3-203ENST00000525074 EEA1Q15075 1411 aa19.07■□□□□ 0.64
TRIM3-203ENST00000525074 ANP32EQ9BTT0 268 aa19.06■□□□□ 0.64
TRIM3-203ENST00000525074 BAZ1BQ9UIG0 1483 aaKnown RBP19.04■□□□□ 0.64
TRIM3-203ENST00000525074 KANK4Q5T7N3 995 aaPredicted RBP19.03■□□□□ 0.64
TRIM3-203ENST00000525074 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
TRIM3-203ENST00000525074 CEP164Q9UPV0 1460 aa19.01■□□□□ 0.63
TRIM3-203ENST00000525074 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
TRIM3-203ENST00000525074 DHX57Q6P158 1386 aaKnown RBP19■□□□□ 0.63
TRIM3-203ENST00000525074 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
TRIM3-203ENST00000525074 FKBP8Q14318 412 aa18.95■□□□□ 0.62
TRIM3-203ENST00000525074 CLSPNQ9HAW4 1339 aa18.93■□□□□ 0.62
TRIM3-203ENST00000525074 ATP1B4Q9UN42 357 aaPredicted RBP18.9■□□□□ 0.62
TRIM3-203ENST00000525074 P3H3Q8IVL6 736 aa18.87■□□□□ 0.61
TRIM3-203ENST00000525074 KIF21BO75037 1637 aa18.86■□□□□ 0.61
TRIM3-203ENST00000525074 DDX10Q13206 875 aaKnown RBP18.85■□□□□ 0.61
TRIM3-203ENST00000525074 HIRIP3Q9BW71 556 aaPredicted RBP18.85■□□□□ 0.61
TRIM3-203ENST00000525074 TRIM52Q96A61 297 aa18.81■□□□□ 0.6
TRIM3-203ENST00000525074 PEG3Q9GZU2 1588 aa18.77■□□□□ 0.6
TRIM3-203ENST00000525074 RBM19Q9Y4C8 960 aaKnown RBP18.76■□□□□ 0.59
TRIM3-203ENST00000525074 ARAP1Q96P48 1450 aa18.75■□□□□ 0.59
TRIM3-203ENST00000525074 SIN3AQ96ST3 1273 aa18.72■□□□□ 0.59
TRIM3-203ENST00000525074 NEFLP07196 543 aa18.72■□□□□ 0.59
TRIM3-203ENST00000525074 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
TRIM3-203ENST00000525074 FAM50AQ14320 339 aaKnown RBP18.68■□□□□ 0.58
TRIM3-203ENST00000525074 CUX1P39880 1505 aa18.67■□□□□ 0.58
TRIM3-203ENST00000525074 IRX6P78412 446 aaPredicted RBP18.64■□□□□ 0.57
TRIM3-203ENST00000525074 CCNB3Q8WWL7 1395 aa18.64■□□□□ 0.57
TRIM3-203ENST00000525074 PRXQ9BXM0 1461 aa18.64■□□□□ 0.57
TRIM3-203ENST00000525074 RAB3GAP2Q9H2M9 1393 aa18.63■□□□□ 0.57
TRIM3-203ENST00000525074 KIF27Q86VH2 1401 aa18.61■□□□□ 0.57
TRIM3-203ENST00000525074 MSH5O43196 834 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms