Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL589843.2-202ENST00000602289 740 ntBASIC13.58□□□□□ -0.24
COL6A3P12111 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 CYP4F12-201ENST00000324632 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 SEMA6A-205ENST00000503865 1678 ntTSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 TTC39A-204ENST00000371750 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 AC027601.5-201ENST00000624065 2482 ntBASIC13.58□□□□□ -0.24
COL6A3P12111 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 SLC25A14-203ENST00000361980 969 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 Z93930.2-203ENST00000585003 516 ntBASIC13.58□□□□□ -0.24
COL6A3P12111 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
COL6A3P12111 SLIRP-212ENST00000613856 420 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
COL6A3P12111 PRSS2-205ENST00000632998 817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 TDG-201ENST00000266775 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.58□□□□□ -0.24
COL6A3P12111 LINC01551-201ENST00000399387 1581 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A3P12111 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 CD33-202ENST00000391796 1089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AC002306.1-201ENST00000559614 937 ntTSL 3 BASIC13.57□□□□□ -0.24
COL6A3P12111 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A3P12111 AC090282.1-202ENST00000575487 515 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A3P12111 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 RPS20P22-202ENST00000488192 1318 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 TMBIM7P-203ENST00000641617 1718 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 AL109954.1-202ENST00000564051 2148 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 COA3-201ENST00000328434 771 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 SERF2-202ENST00000339624 506 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 IGLV4-60-201ENST00000390284 362 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL6A3P12111 AL354707.2-201ENST00000412339 422 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 HNRNPA1P24-201ENST00000476029 1046 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 CMC2-223ENST00000570195 871 ntTSL 3 BASIC13.57□□□□□ -0.24
COL6A3P12111 RN7SL678P-201ENST00000579533 299 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A3P12111 CHCHD2P11-201ENST00000604283 457 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 MIR6074-201ENST00000612054 107 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 BTNL2-201ENST00000374993 1368 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 AC015656.1-201ENST00000624209 3578 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 ACRBP-202ENST00000414226 1700 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 KRT8P46-201ENST00000512037 1426 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 IP6K2-221ENST00000449610 1673 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 FAM183BP-201ENST00000409072 1595 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AP4S1-203ENST00000334725 1122 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 NAALAD2-202ENST00000375944 1149 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AC007128.2-201ENST00000435967 557 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A3P12111 HTR3D-204ENST00000453435 1043 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A3P12111 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A3P12111 AC013489.2-201ENST00000558732 276 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 TMED1-204ENST00000588289 541 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A3P12111 AL731555.1-201ENST00000634547 1259 ntBASIC13.57□□□□□ -0.24
COL6A3P12111 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms