Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 ARHGAP6-201ENST00000303025 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC10.69□□□□□ -0.7
CXCL1P09341 AC004967.1-201ENST00000453589 447 ntBASIC10.69□□□□□ -0.7
CXCL1P09341 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 FTLP10-202ENST00000505798 471 ntBASIC10.69□□□□□ -0.7
CXCL1P09341 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC10.69□□□□□ -0.7
CXCL1P09341 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC10.69□□□□□ -0.7
CXCL1P09341 IGHV3-42-201ENST00000520410 361 ntBASIC10.69□□□□□ -0.7
CXCL1P09341 AC008761.3-201ENST00000624803 892 ntBASIC10.69□□□□□ -0.7
CXCL1P09341 DLC1-210ENST00000512044 3758 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 ATP4A-201ENST00000262623 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 LINC01471-201ENST00000461398 3079 ntTSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 INAVA-201ENST00000367342 4298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 TRIM37-202ENST00000393065 3548 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 SCNN1D-202ENST00000338555 3475 ntAPPRIS ALT2 TSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC10.69□□□□□ -0.7
CXCL1P09341 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 APOL3-205ENST00000397293 2214 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 MYO1C-202ENST00000361007 4734 ntAPPRIS P3 TSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 MIR22HG-208ENST00000574306 2626 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CXCL1P09341 AC009093.2-202ENST00000620513 2079 ntBASIC10.69□□□□□ -0.7
CXCL1P09341 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
CXCL1P09341 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 ZNF135-201ENST00000313434 3025 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 SLC35A4-201ENST00000323146 3041 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 LMX1A-202ENST00000342310 3545 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 CDK5RAP3-202ENST00000536708 1975 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 ADGRF3-202ENST00000333478 3896 ntTSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 PNPLA7-202ENST00000406427 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 SLC13A2-202ENST00000444914 2855 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 HARS-202ENST00000415192 1401 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 ADCY5-201ENST00000309879 2841 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 NFXL1-201ENST00000329043 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 PLK4-203ENST00000507249 3195 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 ANKRD34A-201ENST00000606888 3613 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 AC015909.3-201ENST00000572855 1794 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 CLUHP2-201ENST00000426660 1303 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 AL592528.1-201ENST00000380008 3466 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 AC004890.2-204ENST00000481968 304 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 AP001063.1-201ENST00000568332 529 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC10.68□□□□□ -0.7
CXCL1P09341 KSR1-207ENST00000578981 748 ntTSL 4 BASIC10.68□□□□□ -0.7
CXCL1P09341 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 AC004466.1-201ENST00000599515 1080 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 AC093726.1-201ENST00000608064 963 ntBASIC10.68□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms