RNA–Protein interactions for RNA: ENST00000342310.7

LMX1A-202, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,545 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-202ENST00000342310 NISCHQ9Y2I1 1504 aa23.97■■□□□ 1.43
LMX1A-202ENST00000342310 SHROOM4Q9ULL8 1493 aa22.27■■□□□ 1.16
LMX1A-202ENST00000342310 DCAF8L2P0C7V8 631 aa22.19■■□□□ 1.14
LMX1A-202ENST00000342310 SUPT5HO00267 1087 aaKnown RBP22.07■■□□□ 1.12
LMX1A-202ENST00000342310 EHMT2Q96KQ7 1210 aa21.07■□□□□ 0.96
LMX1A-202ENST00000342310 PCGF6Q9BYE7 350 aa20.88■□□□□ 0.93
LMX1A-202ENST00000342310 FAM9AQ8IZU1 332 aaPredicted RBP20.66■□□□□ 0.9
LMX1A-202ENST00000342310 CHIC1Q5VXU3 224 aa20.66■□□□□ 0.9
LMX1A-202ENST00000342310 LOC105371045A0A1W2PR82 267 aa20.65■□□□□ 0.9
LMX1A-202ENST00000342310 PPARGC1BQ86YN6 1023 aaKnown RBP20.51■□□□□ 0.87
LMX1A-202ENST00000342310 TTBK1Q5TCY1 1321 aaPredicted RBP20.3■□□□□ 0.84
LMX1A-202ENST00000342310 HRCP23327 699 aa20.27■□□□□ 0.83
LMX1A-202ENST00000342310 MYO15BQ96JP2 1530 aa20.26■□□□□ 0.83
LMX1A-202ENST00000342310 TRIM41Q8WV44 630 aa20.14■□□□□ 0.82
LMX1A-202ENST00000342310 ZCCHC6Q5VYS8 1495 aaKnown RBP20.11■□□□□ 0.81
LMX1A-202ENST00000342310 TRIM26Q12899 539 aaPredicted RBP19.81■□□□□ 0.76
LMX1A-202ENST00000342310 RANGAP1P46060 587 aaPredicted RBP19.77■□□□□ 0.76
LMX1A-202ENST00000342310 ABCC9O60706 1549 aa19.68■□□□□ 0.74
LMX1A-202ENST00000342310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.59■□□□□ 0.73
LMX1A-202ENST00000342310 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
LMX1A-202ENST00000342310 CCDC180Q9P1Z9 1646 aa19.54■□□□□ 0.72
LMX1A-202ENST00000342310 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
LMX1A-202ENST00000342310 UBTFP17480 764 aaKnown RBP19.47■□□□□ 0.71
LMX1A-202ENST00000342310 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.7
LMX1A-202ENST00000342310 RSF1Q96T23 1441 aaPredicted RBP19.33■□□□□ 0.69
LMX1A-202ENST00000342310 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
LMX1A-202ENST00000342310 YTHDC1Q96MU7 727 aaKnown RBP19.29■□□□□ 0.68
LMX1A-202ENST00000342310 DCAF1Q9Y4B6 1507 aa19.28■□□□□ 0.68
LMX1A-202ENST00000342310 HNRNPUL2Q1KMD3 747 aaKnown RBP19.22■□□□□ 0.67
LMX1A-202ENST00000342310 CECR2Q9BXF3 1484 aa19.19■□□□□ 0.66
LMX1A-202ENST00000342310 RB1CC1Q8TDY2 1594 aa19.1■□□□□ 0.65
LMX1A-202ENST00000342310 APLP2Q06481 763 aa19.09■□□□□ 0.65
LMX1A-202ENST00000342310 SCAF1Q9H7N4 1312 aaKnown RBP19.03■□□□□ 0.64
LMX1A-202ENST00000342310 DIEXFQ68CQ4 756 aaKnown RBP18.99■□□□□ 0.63
LMX1A-202ENST00000342310 ITGAEP38570 1179 aa18.98■□□□□ 0.63
LMX1A-202ENST00000342310 MROH2BQ7Z745 1585 aa18.91■□□□□ 0.62
LMX1A-202ENST00000342310 ATP1B4Q9UN42 357 aaPredicted RBP18.9■□□□□ 0.62
LMX1A-202ENST00000342310 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
LMX1A-202ENST00000342310 NEUROD1Q13562 356 aa18.83■□□□□ 0.61
LMX1A-202ENST00000342310 GTF3C3Q9Y5Q9 886 aa18.83■□□□□ 0.61
LMX1A-202ENST00000342310 CENPBP07199 599 aaPredicted RBP18.83■□□□□ 0.6
LMX1A-202ENST00000342310 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.6
LMX1A-202ENST00000342310 WIZO95785 1651 aa18.74■□□□□ 0.59
LMX1A-202ENST00000342310 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
LMX1A-202ENST00000342310 SOGA1O94964 1423 aa18.74■□□□□ 0.59
LMX1A-202ENST00000342310 CCDC88BA6NC98 1476 aa18.68■□□□□ 0.58
LMX1A-202ENST00000342310 ACIN1Q9UKV3 1341 aaKnown RBP18.68■□□□□ 0.58
LMX1A-202ENST00000342310 CEP162Q5TB80 1403 aa18.62■□□□□ 0.57
LMX1A-202ENST00000342310 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
LMX1A-202ENST00000342310 ZNF316A6NFI3 1004 aaPredicted RBP18.58■□□□□ 0.57
LMX1A-202ENST00000342310 P3H3Q8IVL6 736 aa18.54■□□□□ 0.56
LMX1A-202ENST00000342310 MIER1Q8N108 512 aa18.54■□□□□ 0.56
LMX1A-202ENST00000342310 NACADO15069 1562 aa18.49■□□□□ 0.55
LMX1A-202ENST00000342310 FAM50AQ14320 339 aaKnown RBP18.39■□□□□ 0.53
LMX1A-202ENST00000342310 BAZ1AQ9NRL2 1556 aaPredicted RBP18.39■□□□□ 0.53
LMX1A-202ENST00000342310 WRNQ14191 1432 aaPredicted RBP eCLIP18.37■□□□□ 0.53
LMX1A-202ENST00000342310 HIRIP3Q9BW71 556 aaPredicted RBP18.36■□□□□ 0.53
LMX1A-202ENST00000342310 CLIP1P30622 1438 aa18.36■□□□□ 0.53
LMX1A-202ENST00000342310 CNGB1Q14028 1251 aaPredicted RBP18.35■□□□□ 0.53
LMX1A-202ENST00000342310 TNIKQ9UKE5 1360 aa18.34■□□□□ 0.53
LMX1A-202ENST00000342310 BCANQ96GW7 911 aa18.34■□□□□ 0.53
LMX1A-202ENST00000342310 ARID3CA6NKF2 412 aa18.28■□□□□ 0.52
LMX1A-202ENST00000342310 KANK4Q5T7N3 995 aaPredicted RBP18.27■□□□□ 0.52
LMX1A-202ENST00000342310 GOLGA3Q08378 1498 aa18.24■□□□□ 0.51
LMX1A-202ENST00000342310 TOP2AP11388 1531 aaKnown RBP18.15■□□□□ 0.5
LMX1A-202ENST00000342310 DDX10Q13206 875 aaKnown RBP18.12■□□□□ 0.49
LMX1A-202ENST00000342310 RAPGEF2Q9Y4G8 1499 aa18.12■□□□□ 0.49
LMX1A-202ENST00000342310 SMARCA4P51532 1647 aa18.12■□□□□ 0.49
LMX1A-202ENST00000342310 SMARCA2P51531 1590 aa18.12■□□□□ 0.49
LMX1A-202ENST00000342310 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
LMX1A-202ENST00000342310 SIN3AQ96ST3 1273 aa18.08■□□□□ 0.49
LMX1A-202ENST00000342310 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
LMX1A-202ENST00000342310 KCNH8Q96L42 1107 aa18.06■□□□□ 0.48
LMX1A-202ENST00000342310 EEA1Q15075 1411 aa18.04■□□□□ 0.48
LMX1A-202ENST00000342310 POLR3GLQ9BT43 218 aa18.03■□□□□ 0.48
LMX1A-202ENST00000342310 TRIM52Q96A61 297 aa18.02■□□□□ 0.47
LMX1A-202ENST00000342310 VPS8Q8N3P4 1428 aa17.98■□□□□ 0.47
LMX1A-202ENST00000342310 SENP3-EIF4A1A0A087X0R7 540 aa17.95■□□□□ 0.46
LMX1A-202ENST00000342310 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
LMX1A-202ENST00000342310 ATAD2BQ9ULI0 1458 aa17.92■□□□□ 0.46
LMX1A-202ENST00000342310 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
LMX1A-202ENST00000342310 NEFLP07196 543 aa17.89■□□□□ 0.45
LMX1A-202ENST00000342310 MYT1Q01538 1121 aa17.89■□□□□ 0.45
LMX1A-202ENST00000342310 FKBP8Q14318 412 aa17.88■□□□□ 0.45
LMX1A-202ENST00000342310 IRX6P78412 446 aaPredicted RBP17.86■□□□□ 0.45
LMX1A-202ENST00000342310 ZNF326Q5BKZ1 582 aaKnown RBP17.82■□□□□ 0.44
LMX1A-202ENST00000342310 DHX57Q6P158 1386 aaKnown RBP17.81■□□□□ 0.44
LMX1A-202ENST00000342310 KIF27Q86VH2 1401 aa17.81■□□□□ 0.44
LMX1A-202ENST00000342310 RRP7BPQ9NSQ0 103 aa17.8■□□□□ 0.44
LMX1A-202ENST00000342310 CCNB3Q8WWL7 1395 aa17.79■□□□□ 0.44
LMX1A-202ENST00000342310 SUPT16HQ9Y5B9 1047 aaKnown RBP17.79■□□□□ 0.44
LMX1A-202ENST00000342310 CUX2O14529 1486 aa17.78■□□□□ 0.44
LMX1A-202ENST00000342310 ANP32CO43423 234 aa17.77■□□□□ 0.43
LMX1A-202ENST00000342310 RAB3GAP2Q9H2M9 1393 aa17.74■□□□□ 0.43
LMX1A-202ENST00000342310 KIF21BO75037 1637 aa17.73■□□□□ 0.43
LMX1A-202ENST00000342310 FBLN2P98095 1184 aa17.73■□□□□ 0.43
LMX1A-202ENST00000342310 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
LMX1A-202ENST00000342310 ARAP1Q96P48 1450 aa17.7■□□□□ 0.42
LMX1A-202ENST00000342310 CARMIL1Q5VZK9 1371 aa17.7■□□□□ 0.42
LMX1A-202ENST00000342310 FOXD1Q16676 465 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms