Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCL13Q99616 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCL13Q99616 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCL13Q99616 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.66■□□□□ 0.58
CCL13Q99616 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCL13Q99616 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCL13Q99616 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CCL13Q99616 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.65■□□□□ 0.58
CCL13Q99616 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCL13Q99616 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCL13Q99616 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CCL13Q99616 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.65■□□□□ 0.58
CCL13Q99616 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.65■□□□□ 0.58
CCL13Q99616 AC009086.3-201ENST00000623486 1008 ntBASIC18.65■□□□□ 0.58
CCL13Q99616 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.65■□□□□ 0.58
CCL13Q99616 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.65■□□□□ 0.58
CCL13Q99616 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCL13Q99616 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CCL13Q99616 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CCL13Q99616 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.64■□□□□ 0.57
CCL13Q99616 AC006455.2-201ENST00000429931 906 ntBASIC18.64■□□□□ 0.57
CCL13Q99616 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCL13Q99616 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCL13Q99616 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCL13Q99616 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CCL13Q99616 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.64■□□□□ 0.57
CCL13Q99616 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCL13Q99616 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.63■□□□□ 0.57
CCL13Q99616 DUX4L4-201ENST00000566884 1269 ntBASIC18.63■□□□□ 0.57
CCL13Q99616 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.63■□□□□ 0.57
CCL13Q99616 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.63■□□□□ 0.57
CCL13Q99616 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCL13Q99616 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCL13Q99616 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.62■□□□□ 0.57
CCL13Q99616 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.62■□□□□ 0.57
CCL13Q99616 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.62■□□□□ 0.57
CCL13Q99616 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.62■□□□□ 0.57
CCL13Q99616 AC092171.4-201ENST00000609130 632 ntBASIC18.62■□□□□ 0.57
CCL13Q99616 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CCL13Q99616 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCL13Q99616 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CCL13Q99616 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.62■□□□□ 0.57
CCL13Q99616 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.62■□□□□ 0.57
CCL13Q99616 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.62■□□□□ 0.57
CCL13Q99616 DUSP8P5-201ENST00000422884 1815 ntBASIC18.62■□□□□ 0.57
CCL13Q99616 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCL13Q99616 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCL13Q99616 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.61■□□□□ 0.57
CCL13Q99616 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCL13Q99616 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.61■□□□□ 0.57
CCL13Q99616 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCL13Q99616 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCL13Q99616 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCL13Q99616 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.61■□□□□ 0.57
CCL13Q99616 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCL13Q99616 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 SYT6-210ENST00000641643 1587 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCL13Q99616 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.6■□□□□ 0.57
CCL13Q99616 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.6■□□□□ 0.57
CCL13Q99616 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 pRNA.6-201ENST00000610482 90 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 pRNA.5-201ENST00000612139 90 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.6■□□□□ 0.57
CCL13Q99616 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCL13Q99616 pRNA.11-201ENST00000618423 90 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 pRNA.13-201ENST00000619112 90 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.6■□□□□ 0.57
CCL13Q99616 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.6■□□□□ 0.57
CCL13Q99616 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCL13Q99616 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.6■□□□□ 0.57
CCL13Q99616 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCL13Q99616 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms