Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.14■■□□□ 1.14
PTCD3Q96EY7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PTCD3Q96EY7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PTCD3Q96EY7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
PTCD3Q96EY7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 AL031848.2-201ENST00000607670 837 ntBASIC22.13■■□□□ 1.13
PTCD3Q96EY7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.13■■□□□ 1.13
PTCD3Q96EY7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 AC242852.2-201ENST00000615738 1807 ntBASIC22.12■■□□□ 1.13
PTCD3Q96EY7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCD3Q96EY7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.11■■□□□ 1.13
PTCD3Q96EY7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCD3Q96EY7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCD3Q96EY7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCD3Q96EY7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PTCD3Q96EY7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
PTCD3Q96EY7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PTCD3Q96EY7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCD3Q96EY7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 AC137630.3-201ENST00000607245 391 ntBASIC22.06■■□□□ 1.12
PTCD3Q96EY7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PTCD3Q96EY7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.05■■□□□ 1.12
PTCD3Q96EY7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PTCD3Q96EY7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PTCD3Q96EY7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms